Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 SAT1-201ENST00000379251 801 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 SAT1-202ENST00000379253 909 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 SAT1-203ENST00000379254 868 ntTSL 3 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 RPL5P21-201ENST00000404620 815 ntBASIC13.98□□□□□ -0.17
VPS13AQ96RL7 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 RN7SL788P-201ENST00000460504 316 ntBASIC13.98□□□□□ -0.17
VPS13AQ96RL7 RRNAD1-204ENST00000476229 1096 ntTSL 5 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 DPY19L2P4-201ENST00000479881 442 ntBASIC13.98□□□□□ -0.17
VPS13AQ96RL7 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 BOLA3P2-201ENST00000586496 323 ntBASIC13.98□□□□□ -0.17
VPS13AQ96RL7 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 KRT8P43-201ENST00000406052 1458 ntBASIC13.98□□□□□ -0.17
VPS13AQ96RL7 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS13AQ96RL7 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 KRT18P33-201ENST00000398525 1043 ntBASIC13.97□□□□□ -0.17
VPS13AQ96RL7 AL121949.1-201ENST00000402043 968 ntBASIC13.97□□□□□ -0.17
VPS13AQ96RL7 HNRNPABP1-201ENST00000406003 734 ntBASIC13.97□□□□□ -0.17
VPS13AQ96RL7 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 MYL6-215ENST00000549566 685 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 NDUFB10P1-201ENST00000567319 521 ntBASIC13.97□□□□□ -0.17
VPS13AQ96RL7 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 FAM21EP-201ENST00000417804 985 ntBASIC13.97□□□□□ -0.17
VPS13AQ96RL7 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 ABCC6P2-201ENST00000526069 590 ntBASIC13.97□□□□□ -0.17
VPS13AQ96RL7 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC13.97□□□□□ -0.17
VPS13AQ96RL7 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms