Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC13.04□□□□□ -0.32
RFT1Q96AA3 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.04□□□□□ -0.32
RFT1Q96AA3 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RFT1Q96AA3 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
RFT1Q96AA3 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
RFT1Q96AA3 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RFT1Q96AA3 SMARCA2-209ENST00000382203 5867 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
RFT1Q96AA3 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RFT1Q96AA3 AL137783.1-201ENST00000623494 1896 ntBASIC13.04□□□□□ -0.32
RFT1Q96AA3 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
RFT1Q96AA3 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RFT1Q96AA3 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
RFT1Q96AA3 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 C2-206ENST00000442278 2434 ntTSL 2 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 BEND3P3-201ENST00000611030 2440 ntBASIC13.03□□□□□ -0.32
RFT1Q96AA3 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 AC111170.3-201ENST00000624282 2464 ntBASIC13.03□□□□□ -0.32
RFT1Q96AA3 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 ZNF890P-202ENST00000530367 1156 ntBASIC13.03□□□□□ -0.32
RFT1Q96AA3 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 AC009407.1-201ENST00000568958 598 ntBASIC13.03□□□□□ -0.32
RFT1Q96AA3 AC008738.7-201ENST00000609744 511 ntBASIC13.03□□□□□ -0.32
RFT1Q96AA3 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 FP325330.2-201ENST00000624219 5630 ntBASIC13.03□□□□□ -0.32
RFT1Q96AA3 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.03□□□□□ -0.32
RFT1Q96AA3 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFT1Q96AA3 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFT1Q96AA3 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC13.02□□□□□ -0.32
RFT1Q96AA3 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC13.02□□□□□ -0.32
RFT1Q96AA3 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.02□□□□□ -0.32
RFT1Q96AA3 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
RFT1Q96AA3 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC13.02□□□□□ -0.32
RFT1Q96AA3 MEX3B-202ENST00000558133 4333 ntBASIC13.02□□□□□ -0.32
RFT1Q96AA3 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.02□□□□□ -0.32
RFT1Q96AA3 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFT1Q96AA3 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.02□□□□□ -0.32
RFT1Q96AA3 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFT1Q96AA3 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFT1Q96AA3 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC13.02□□□□□ -0.32
RFT1Q96AA3 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFT1Q96AA3 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFT1Q96AA3 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFT1Q96AA3 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.32
RFT1Q96AA3 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFT1Q96AA3 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFT1Q96AA3 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC13.02□□□□□ -0.32
RFT1Q96AA3 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC13.02□□□□□ -0.33
RFT1Q96AA3 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
RFT1Q96AA3 CICP16-201ENST00000502609 2813 ntBASIC13.02□□□□□ -0.33
RFT1Q96AA3 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RFT1Q96AA3 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RFT1Q96AA3 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.02□□□□□ -0.33
RFT1Q96AA3 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.02□□□□□ -0.33
RFT1Q96AA3 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.02□□□□□ -0.33
RFT1Q96AA3 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
RFT1Q96AA3 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC13.02□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms