Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 AC015688.4-201ENST00000580780 1647 ntBASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 MIR663B-201ENST00000408361 115 ntBASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 MIR1908-201ENST00000410394 80 ntBASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 ACTBP11-201ENST00000436287 1126 ntBASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 AC100827.2-201ENST00000563214 1194 ntBASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 RN7SL219P-201ENST00000582872 296 ntBASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 TP73-201ENST00000346387 4854 ntTSL 5 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 POM121L10P-201ENST00000436994 1285 ntBASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 AC104982.3-201ENST00000581995 514 ntBASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 AC132192.2-201ENST00000596206 1147 ntBASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 AC009955.4-201ENST00000597192 544 ntBASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 MIR6074-201ENST00000612054 107 ntBASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 AL096828.3-201ENST00000615354 462 ntBASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 AL023803.2-201ENST00000620080 638 ntBASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 HSPA7-201ENST00000445535 1927 ntBASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 AC026748.1-201ENST00000624349 3251 ntBASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms