Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 NEU3-202ENST00000526068 431 ntTSL 2 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 AP001258.2-201ENST00000529891 490 ntBASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 AC023310.3-201ENST00000557027 670 ntBASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 AC100756.1-201ENST00000562736 682 ntBASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 AC138749.3-201ENST00000567691 622 ntBASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 SAMD11P1-201ENST00000571429 661 ntBASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 MIR5572-201ENST00000583188 137 ntBASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 AC010328.2-201ENST00000597698 1111 ntBASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 AC116165.1-201ENST00000611806 668 ntBASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 MIR8072-201ENST00000614241 80 ntBASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 PID1-202ENST00000392054 2745 ntTSL 2 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AP001267.2-201ENST00000532619 2086 ntBASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 OR2I1P-208ENST00000641137 4948 ntBASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 IGF1-203ENST00000392904 761 ntTSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 UPF3AP2-201ENST00000457924 1132 ntBASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 SLC25A47P1-201ENST00000531577 414 ntBASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
PDLIM3Q53GG5 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC12.25□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms