Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
PTPN9P43378 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN9P43378 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
PTPN9P43378 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN9P43378 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
PTPN9P43378 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PTPN9P43378 KRT18P36-201ENST00000411618 1276 ntBASIC15.13■□□□□ 0.01
PTPN9P43378 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.13■□□□□ 0.01
PTPN9P43378 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN9P43378 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC15.13■□□□□ 0.01
PTPN9P43378 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC15.13■□□□□ 0.01
PTPN9P43378 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN9P43378 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC15.13■□□□□ 0.01
PTPN9P43378 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC15.13■□□□□ 0.01
PTPN9P43378 AC124068.2-201ENST00000569473 1109 ntBASIC15.13■□□□□ 0.01
PTPN9P43378 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN9P43378 AC104982.3-201ENST00000581995 514 ntBASIC15.13■□□□□ 0.01
PTPN9P43378 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN9P43378 KLK3-207ENST00000595952 969 ntTSL 3 BASIC15.13■□□□□ 0.01
PTPN9P43378 AC021016.3-201ENST00000608367 477 ntBASIC15.13■□□□□ 0.01
PTPN9P43378 DIO1-215ENST00000610607 796 ntTSL 5 BASIC15.13■□□□□ 0.01
PTPN9P43378 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
PTPN9P43378 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC15.13■□□□□ 0.01
PTPN9P43378 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC15.13■□□□□ 0.01
PTPN9P43378 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
PTPN9P43378 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
PTPN9P43378 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
PTPN9P43378 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
PTPN9P43378 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.13■□□□□ 0.01
PTPN9P43378 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN9P43378 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN9P43378 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
PTPN9P43378 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 AC117489.1-201ENST00000625169 3217 ntBASIC15.12■□□□□ 0.01
PTPN9P43378 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN9P43378 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC15.12■□□□□ 0.01
PTPN9P43378 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
PTPN9P43378 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
PTPN9P43378 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 RNMTL1P1-201ENST00000454103 560 ntBASIC15.12■□□□□ 0.01
PTPN9P43378 RPL18P13-201ENST00000478088 569 ntBASIC15.12■□□□□ 0.01
PTPN9P43378 HLA-J-204ENST00000495278 958 ntBASIC15.12■□□□□ 0.01
PTPN9P43378 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN9P43378 FAM8A2P-201ENST00000528813 1142 ntBASIC15.12■□□□□ 0.01
PTPN9P43378 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.12■□□□□ 0.01
PTPN9P43378 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN9P43378 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.12■□□□□ 0.01
PTPN9P43378 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC15.12■□□□□ 0.01
PTPN9P43378 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC15.12■□□□□ 0.01
PTPN9P43378 AC007663.3-201ENST00000609632 465 ntBASIC15.12■□□□□ 0.01
PTPN9P43378 PRKN-211ENST00000615065 261 ntTSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.12■□□□□ 0.01
PTPN9P43378 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN9P43378 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN9P43378 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PTPN9P43378 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN9P43378 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN9P43378 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms