Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SCN4AP35499 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SCN4AP35499 MIR1307-201ENST00000408840 149 ntBASIC16.63■□□□□ 0.25
SCN4AP35499 SAP18P2-201ENST00000434334 459 ntBASIC16.63■□□□□ 0.25
SCN4AP35499 CD81-209ENST00000492627 886 ntTSL 3 BASIC16.63■□□□□ 0.25
SCN4AP35499 MARK2P17-201ENST00000498560 841 ntBASIC16.63■□□□□ 0.25
SCN4AP35499 TMA16-204ENST00000508268 608 ntTSL 2 BASIC16.63■□□□□ 0.25
SCN4AP35499 OR52V1P-201ENST00000515557 898 ntBASIC16.63■□□□□ 0.25
SCN4AP35499 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC16.63■□□□□ 0.25
SCN4AP35499 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC16.63■□□□□ 0.25
SCN4AP35499 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC16.63■□□□□ 0.25
SCN4AP35499 MIR5091-201ENST00000578707 93 ntBASIC16.63■□□□□ 0.25
SCN4AP35499 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC16.63■□□□□ 0.25
SCN4AP35499 RN7SL478P-201ENST00000584358 298 ntBASIC16.63■□□□□ 0.25
SCN4AP35499 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC16.63■□□□□ 0.25
SCN4AP35499 ACTBP9-201ENST00000587663 1099 ntBASIC16.63■□□□□ 0.25
SCN4AP35499 RPS5-205ENST00000598495 800 ntTSL 3 BASIC16.63■□□□□ 0.25
SCN4AP35499 AC022001.3-201ENST00000606330 596 ntBASIC16.63■□□□□ 0.25
SCN4AP35499 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
SCN4AP35499 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.63■□□□□ 0.25
SCN4AP35499 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.63■□□□□ 0.25
SCN4AP35499 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.63■□□□□ 0.25
SCN4AP35499 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 AL137077.2-201ENST00000635124 1608 ntBASIC16.63■□□□□ 0.25
SCN4AP35499 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.63■□□□□ 0.25
SCN4AP35499 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SCN4AP35499 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SCN4AP35499 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC16.63■□□□□ 0.25
SCN4AP35499 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 AC079250.1-201ENST00000456046 531 ntBASIC16.63■□□□□ 0.25
SCN4AP35499 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC16.63■□□□□ 0.25
SCN4AP35499 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SCN4AP35499 TPST2P1-201ENST00000564073 1102 ntBASIC16.63■□□□□ 0.25
SCN4AP35499 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC16.63■□□□□ 0.25
SCN4AP35499 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC16.63■□□□□ 0.25
SCN4AP35499 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SCN4AP35499 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SCN4AP35499 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SCN4AP35499 Z98885.3-201ENST00000624882 1757 ntBASIC16.63■□□□□ 0.25
SCN4AP35499 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
SCN4AP35499 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC16.62■□□□□ 0.25
SCN4AP35499 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 TUBB2BP1-201ENST00000404155 871 ntBASIC16.62■□□□□ 0.25
SCN4AP35499 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC16.62■□□□□ 0.25
SCN4AP35499 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC16.62■□□□□ 0.25
SCN4AP35499 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC16.62■□□□□ 0.25
SCN4AP35499 CCND3P1-201ENST00000438347 580 ntBASIC16.62■□□□□ 0.25
SCN4AP35499 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC16.62■□□□□ 0.25
SCN4AP35499 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SCN4AP35499 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC16.62■□□□□ 0.25
SCN4AP35499 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC16.62■□□□□ 0.25
SCN4AP35499 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC16.62■□□□□ 0.25
SCN4AP35499 IFNL3P1-201ENST00000595082 501 ntBASIC16.62■□□□□ 0.25
SCN4AP35499 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC16.62■□□□□ 0.25
SCN4AP35499 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC16.62■□□□□ 0.25
SCN4AP35499 AL590556.2-202ENST00000636906 844 ntBASIC16.62■□□□□ 0.25
SCN4AP35499 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC16.62■□□□□ 0.25
SCN4AP35499 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 AL139158.3-201ENST00000641212 1562 ntBASIC16.62■□□□□ 0.25
SCN4AP35499 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.62■□□□□ 0.25
SCN4AP35499 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SCN4AP35499 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC16.61■□□□□ 0.25
SCN4AP35499 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.61■□□□□ 0.25
SCN4AP35499 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.61■□□□□ 0.25
SCN4AP35499 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SCN4AP35499 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC16.61■□□□□ 0.25
SCN4AP35499 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC16.61■□□□□ 0.25
SCN4AP35499 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC16.61■□□□□ 0.25
SCN4AP35499 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC16.61■□□□□ 0.25
SCN4AP35499 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC16.61■□□□□ 0.25
SCN4AP35499 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms