Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A5P29400 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
COL4A5P29400 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A5P29400 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A5P29400 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL4A5P29400 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A5P29400 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC16.94■□□□□ 0.3
COL4A5P29400 PGK1P2-201ENST00000431702 1214 ntBASIC16.94■□□□□ 0.3
COL4A5P29400 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC16.94■□□□□ 0.3
COL4A5P29400 GULOP-201ENST00000454030 748 ntBASIC16.94■□□□□ 0.3
COL4A5P29400 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC16.94■□□□□ 0.3
COL4A5P29400 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A5P29400 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC16.94■□□□□ 0.3
COL4A5P29400 AC022447.6-201ENST00000515522 438 ntBASIC16.94■□□□□ 0.3
COL4A5P29400 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC16.94■□□□□ 0.3
COL4A5P29400 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC16.94■□□□□ 0.3
COL4A5P29400 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC16.94■□□□□ 0.3
COL4A5P29400 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A5P29400 RPL13AP3-202ENST00000494676 1473 ntBASIC16.94■□□□□ 0.3
COL4A5P29400 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A5P29400 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
COL4A5P29400 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A5P29400 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.94■□□□□ 0.3
COL4A5P29400 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A5P29400 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC16.93■□□□□ 0.3
COL4A5P29400 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 AC068760.1-201ENST00000493579 1953 ntBASIC16.93■□□□□ 0.3
COL4A5P29400 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
COL4A5P29400 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.93■□□□□ 0.3
COL4A5P29400 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 SALL4P6-201ENST00000429385 1691 ntBASIC16.93■□□□□ 0.3
COL4A5P29400 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
COL4A5P29400 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 U3.5-201ENST00000363448 216 ntBASIC16.93■□□□□ 0.3
COL4A5P29400 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC16.93■□□□□ 0.3
COL4A5P29400 CDK4P1-201ENST00000454213 828 ntBASIC16.93■□□□□ 0.3
COL4A5P29400 HNRNPA1P56-201ENST00000505767 954 ntBASIC16.93■□□□□ 0.3
COL4A5P29400 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC16.93■□□□□ 0.3
COL4A5P29400 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC16.93■□□□□ 0.3
COL4A5P29400 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC16.93■□□□□ 0.3
COL4A5P29400 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC16.93■□□□□ 0.3
COL4A5P29400 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
COL4A5P29400 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 Z98885.3-201ENST00000624882 1757 ntBASIC16.93■□□□□ 0.3
COL4A5P29400 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
COL4A5P29400 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.93■□□□□ 0.3
COL4A5P29400 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL4A5P29400 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
COL4A5P29400 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
COL4A5P29400 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 RNA5SP491-201ENST00000362936 118 ntBASIC16.92■□□□□ 0.3
COL4A5P29400 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
COL4A5P29400 ACTBP14-201ENST00000411655 1089 ntBASIC16.92■□□□□ 0.3
COL4A5P29400 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC16.92■□□□□ 0.3
COL4A5P29400 RPSAP12-201ENST00000435879 888 ntBASIC16.92■□□□□ 0.3
COL4A5P29400 TREX1-203ENST00000456089 629 ntTSL 3 BASIC16.92■□□□□ 0.3
COL4A5P29400 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC16.92■□□□□ 0.3
COL4A5P29400 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC16.92■□□□□ 0.3
COL4A5P29400 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC16.92■□□□□ 0.3
COL4A5P29400 AC005777.1-201ENST00000588332 187 ntBASIC16.92■□□□□ 0.3
COL4A5P29400 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC16.92■□□□□ 0.3
COL4A5P29400 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC16.92■□□□□ 0.3
COL4A5P29400 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
COL4A5P29400 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
COL4A5P29400 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.92■□□□□ 0.3
COL4A5P29400 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
COL4A5P29400 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL4A5P29400 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
COL4A5P29400 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL4A5P29400 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC16.91■□□□□ 0.3
COL4A5P29400 AC133141.1-201ENST00000443015 339 ntBASIC16.91■□□□□ 0.3
COL4A5P29400 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms