Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC19.88■□□□□ 0.77
NPHP4O75161 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC19.87■□□□□ 0.77
NPHP4O75161 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP4O75161 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP4O75161 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
NPHP4O75161 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP4O75161 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP4O75161 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP4O75161 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP4O75161 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
NPHP4O75161 FTH1P18-201ENST00000412071 549 ntBASIC19.87■□□□□ 0.77
NPHP4O75161 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
NPHP4O75161 AL590556.2-202ENST00000636906 844 ntBASIC19.87■□□□□ 0.77
NPHP4O75161 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
NPHP4O75161 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
NPHP4O75161 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC19.87■□□□□ 0.77
NPHP4O75161 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
NPHP4O75161 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP4O75161 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP4O75161 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
NPHP4O75161 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
NPHP4O75161 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC19.87■□□□□ 0.77
NPHP4O75161 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.87■□□□□ 0.77
NPHP4O75161 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP4O75161 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP4O75161 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
NPHP4O75161 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP4O75161 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP4O75161 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 BX088651.3-201ENST00000418155 352 ntBASIC19.86■□□□□ 0.77
NPHP4O75161 AL954722.1-201ENST00000431238 259 ntBASIC19.86■□□□□ 0.77
NPHP4O75161 SAP18P2-201ENST00000434334 459 ntBASIC19.86■□□□□ 0.77
NPHP4O75161 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP4O75161 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 AC093700.1-201ENST00000503348 717 ntBASIC19.86■□□□□ 0.77
NPHP4O75161 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC19.86■□□□□ 0.77
NPHP4O75161 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP4O75161 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 RN7SL478P-201ENST00000584358 298 ntBASIC19.86■□□□□ 0.77
NPHP4O75161 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 AL121753.2-201ENST00000624581 1461 ntBASIC19.86■□□□□ 0.77
NPHP4O75161 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.86■□□□□ 0.77
NPHP4O75161 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
NPHP4O75161 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.86■□□□□ 0.77
NPHP4O75161 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NPHP4O75161 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
NPHP4O75161 AC000077.1-201ENST00000420012 953 ntBASIC19.85■□□□□ 0.77
NPHP4O75161 AC010086.2-201ENST00000428616 226 ntBASIC19.85■□□□□ 0.77
NPHP4O75161 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP4O75161 PGK1P2-201ENST00000431702 1214 ntBASIC19.85■□□□□ 0.77
NPHP4O75161 COQ10BP2-201ENST00000513804 724 ntBASIC19.85■□□□□ 0.77
NPHP4O75161 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC19.85■□□□□ 0.77
NPHP4O75161 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP4O75161 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
NPHP4O75161 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC19.85■□□□□ 0.77
NPHP4O75161 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP4O75161 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC19.85■□□□□ 0.77
NPHP4O75161 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP4O75161 OR3A1-202ENST00000615105 966 ntBASIC19.85■□□□□ 0.77
NPHP4O75161 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC19.85■□□□□ 0.77
NPHP4O75161 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP4O75161 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP4O75161 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
NPHP4O75161 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP4O75161 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP4O75161 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP4O75161 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP4O75161 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP4O75161 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
NPHP4O75161 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP4O75161 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP4O75161 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP4O75161 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP4O75161 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC19.85■□□□□ 0.77
NPHP4O75161 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP4O75161 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP4O75161 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
NPHP4O75161 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
NPHP4O75161 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP4O75161 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP4O75161 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
NPHP4O75161 TPT1P9-201ENST00000413759 514 ntBASIC19.85■□□□□ 0.77
NPHP4O75161 OR4C14P-201ENST00000440929 923 ntBASIC19.85■□□□□ 0.77
NPHP4O75161 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC19.85■□□□□ 0.77
NPHP4O75161 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC19.85■□□□□ 0.77
NPHP4O75161 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC19.85■□□□□ 0.77
NPHP4O75161 AC010503.4-201ENST00000615487 688 ntBASIC19.85■□□□□ 0.77
NPHP4O75161 MIR8071-1-201ENST00000616769 65 ntBASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms