Protein–RNA interactions for Protein: Q9UHC9

NPC1L1, Niemann-Pick C1-like protein 1, humanhuman

Predictions only

Length 1,359 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1Q9UHC9 MST1P2-201ENST00000457982 2291 ntBASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 AC011474.4-201ENST00000623523 2076 ntBASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 AC026320.2-201ENST00000434379 478 ntBASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 RN7SL720P-201ENST00000488178 304 ntBASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 AC005740.1-201ENST00000515639 522 ntBASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC19.32■□□□□ 0.68
NPC1L1Q9UHC9 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 AL590824.1-201ENST00000403828 1349 ntBASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 USP28-214ENST00000545540 3431 ntTSL 2 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 LINC00265-2P-201ENST00000413372 782 ntBASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 AK2P2-201ENST00000439142 405 ntBASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 IMP3P2-201ENST00000489760 475 ntBASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 AC245884.6-201ENST00000515672 1067 ntBASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 CMC2-204ENST00000562713 573 ntTSL 3 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 CMC2-209ENST00000565108 399 ntTSL 2 BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NPC1L1Q9UHC9 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 KRT8P19-201ENST00000551916 1455 ntBASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC19.3■□□□□ 0.68
NPC1L1Q9UHC9 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPC1L1Q9UHC9 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPC1L1Q9UHC9 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPC1L1Q9UHC9 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPC1L1Q9UHC9 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPC1L1Q9UHC9 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPC1L1Q9UHC9 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
NPC1L1Q9UHC9 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC19.29■□□□□ 0.68
NPC1L1Q9UHC9 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
NPC1L1Q9UHC9 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPC1L1Q9UHC9 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPC1L1Q9UHC9 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NPC1L1Q9UHC9 KRT18P9-201ENST00000604826 1300 ntBASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms