Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 OR2R1P-201ENST00000441404 914 ntBASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 AL023803.2-201ENST00000620080 638 ntBASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 AL157996.1-201ENST00000624684 2299 ntBASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 LAP3P2-201ENST00000454686 1454 ntBASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BLOC1S4Q9NUP1 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 AC021723.1-201ENST00000486306 515 ntBASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 AC022217.1-201ENST00000521069 738 ntBASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 AC007663.3-201ENST00000609632 465 ntBASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 AC068587.8-201ENST00000641239 219 ntBASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
BLOC1S4Q9NUP1 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.18
BLOC1S4Q9NUP1 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.18
BLOC1S4Q9NUP1 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms