Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.21■□□□□ 0.51
SHANK3Q9BYB0 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC18.21■□□□□ 0.51
SHANK3Q9BYB0 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHANK3Q9BYB0 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHANK3Q9BYB0 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SHANK3Q9BYB0 AC020931.1-201ENST00000589622 1346 ntBASIC18.21■□□□□ 0.51
SHANK3Q9BYB0 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHANK3Q9BYB0 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
SHANK3Q9BYB0 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHANK3Q9BYB0 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHANK3Q9BYB0 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SHANK3Q9BYB0 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHANK3Q9BYB0 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
SHANK3Q9BYB0 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 AC092810.2-201ENST00000431570 362 ntBASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 HNRNPA3P6-201ENST00000472163 1006 ntBASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 CTBP2P6-201ENST00000526402 1229 ntBASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 AC120498.7-201ENST00000562876 330 ntBASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 AC079414.2-201ENST00000567157 1104 ntBASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 AC113385.2-201ENST00000614465 762 ntBASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 AC126177.1-201ENST00000547829 2218 ntBASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 FDPSP7-201ENST00000429043 1054 ntBASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 AC025594.1-201ENST00000469533 543 ntBASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC18.2■□□□□ 0.5
SHANK3Q9BYB0 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 AC023906.1-201ENST00000486386 453 ntBASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 AC004466.2-201ENST00000614749 516 ntBASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 AC110057.1-201ENST00000636031 898 ntBASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 SALL4P6-201ENST00000429385 1691 ntBASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 FGD5P1-202ENST00000614866 2498 ntBASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 AC092384.3-202ENST00000564646 2873 ntBASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.19■□□□□ 0.5
SHANK3Q9BYB0 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 POLL-206ENST00000370172 2308 ntTSL 2 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 HNRNPA1P21-201ENST00000424115 961 ntBASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 AC079250.1-201ENST00000456046 531 ntBASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC18.18■□□□□ 0.5
SHANK3Q9BYB0 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms