Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC3Q9BQI4 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 LINC00528-201ENST00000600723 2160 ntBASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 AC073150.1-201ENST00000450406 1084 ntBASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 U62317.3-201ENST00000608319 855 ntBASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 MIR6727-201ENST00000620702 65 ntBASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 AC006480.2-201ENST00000609770 1337 ntBASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.29□□□□□ -0.12
CCDC3Q9BQI4 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 ST20-AS1-201ENST00000560255 4223 ntBASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 CEP164P1-201ENST00000455142 418 ntBASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 CFL1-214ENST00000534769 758 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 AC242376.1-201ENST00000559033 726 ntBASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 BX088702.1-201ENST00000610784 235 ntBASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms