Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 BEND3P1-201ENST00000421591 1944 ntBASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDLIM3Q53GG5 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDLIM3Q53GG5 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDLIM3Q53GG5 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDLIM3Q53GG5 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDLIM3Q53GG5 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDLIM3Q53GG5 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
PDLIM3Q53GG5 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDLIM3Q53GG5 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDLIM3Q53GG5 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDLIM3Q53GG5 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDLIM3Q53GG5 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDLIM3Q53GG5 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
PDLIM3Q53GG5 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 AC027601.5-201ENST00000624065 2482 ntBASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 TP73-209ENST00000603362 1668 ntTSL 5 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 PCDHA5-203ENST00000614258 4248 ntBASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 AC098850.1-201ENST00000419919 790 ntBASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 ARTN-209ENST00000479128 471 ntTSL 3 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 AC044860.1-202ENST00000559481 777 ntBASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 AC091271.1-201ENST00000611877 1162 ntBASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 AC041040.2-201ENST00000622926 2899 ntBASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
PDLIM3Q53GG5 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
PDLIM3Q53GG5 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms