Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC13.88□□□□□ -0.19
CLK1P49759 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
CLK1P49759 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.88□□□□□ -0.19
CLK1P49759 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.88□□□□□ -0.19
CLK1P49759 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 VDAC1P7-201ENST00000462417 847 ntBASIC13.88□□□□□ -0.19
CLK1P49759 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.88□□□□□ -0.19
CLK1P49759 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC13.88□□□□□ -0.19
CLK1P49759 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC13.88□□□□□ -0.19
CLK1P49759 POLD4-211ENST00000539074 714 ntTSL 3 BASIC13.88□□□□□ -0.19
CLK1P49759 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC13.88□□□□□ -0.19
CLK1P49759 AC120045.2-201ENST00000567334 178 ntBASIC13.88□□□□□ -0.19
CLK1P49759 TP53TG3HP-202ENST00000569755 579 ntBASIC13.88□□□□□ -0.19
CLK1P49759 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13.88□□□□□ -0.19
CLK1P49759 AC107373.2-201ENST00000607735 490 ntBASIC13.88□□□□□ -0.19
CLK1P49759 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC13.88□□□□□ -0.19
CLK1P49759 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.88□□□□□ -0.19
CLK1P49759 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC13.88□□□□□ -0.19
CLK1P49759 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC13.88□□□□□ -0.19
CLK1P49759 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CLK1P49759 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.88□□□□□ -0.19
CLK1P49759 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.88□□□□□ -0.19
CLK1P49759 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CLK1P49759 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC13.88□□□□□ -0.19
CLK1P49759 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CLK1P49759 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 AC105206.1-202ENST00000314927 2368 ntBASIC13.88□□□□□ -0.19
CLK1P49759 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CLK1P49759 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CLK1P49759 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLK1P49759 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC13.88□□□□□ -0.19
CLK1P49759 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CLK1P49759 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 ATL2-204ENST00000406122 2864 ntTSL 5 BASIC13.87□□□□□ -0.19
CLK1P49759 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.87□□□□□ -0.19
CLK1P49759 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC13.87□□□□□ -0.19
CLK1P49759 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
CLK1P49759 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CLK1P49759 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 SOCS2P1-201ENST00000417727 557 ntBASIC13.87□□□□□ -0.19
CLK1P49759 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC13.87□□□□□ -0.19
CLK1P49759 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.87□□□□□ -0.19
CLK1P49759 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
CLK1P49759 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC13.87□□□□□ -0.19
CLK1P49759 CHCHD2P3-201ENST00000603038 451 ntBASIC13.87□□□□□ -0.19
CLK1P49759 AC133539.2-201ENST00000604757 467 ntBASIC13.87□□□□□ -0.19
CLK1P49759 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC13.87□□□□□ -0.19
CLK1P49759 MIR8072-201ENST00000614241 80 ntBASIC13.87□□□□□ -0.19
CLK1P49759 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC13.87□□□□□ -0.19
CLK1P49759 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.87□□□□□ -0.19
CLK1P49759 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CLK1P49759 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLK1P49759 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.87□□□□□ -0.19
CLK1P49759 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.87□□□□□ -0.19
CLK1P49759 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 135.4 ms