Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC244107.1-201ENST00000442033 332 ntBASIC12.07□□□□□ -0.48
CDX1P47902 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC12.07□□□□□ -0.48
CDX1P47902 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 GPR53P-205ENST00000457298 1084 ntBASIC12.07□□□□□ -0.48
CDX1P47902 VDAC1P7-201ENST00000462417 847 ntBASIC12.07□□□□□ -0.48
CDX1P47902 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC12.07□□□□□ -0.48
CDX1P47902 AC026410.3-201ENST00000514280 936 ntBASIC12.07□□□□□ -0.48
CDX1P47902 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC12.07□□□□□ -0.48
CDX1P47902 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC12.07□□□□□ -0.48
CDX1P47902 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
CDX1P47902 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CDX1P47902 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CDX1P47902 GPX4-206ENST00000588919 803 ntTSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
CDX1P47902 APOC4-201ENST00000591600 348 ntTSL 3 BASIC12.07□□□□□ -0.48
CDX1P47902 AC010319.3-201ENST00000597028 470 ntBASIC12.07□□□□□ -0.48
CDX1P47902 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC12.07□□□□□ -0.48
CDX1P47902 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC12.07□□□□□ -0.48
CDX1P47902 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 TRIM80P-201ENST00000455685 2848 ntBASIC12.07□□□□□ -0.48
CDX1P47902 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CDX1P47902 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CDX1P47902 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
CDX1P47902 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CDX1P47902 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 TP73-209ENST00000603362 1668 ntTSL 5 BASIC12.06□□□□□ -0.48
CDX1P47902 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
CDX1P47902 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
CDX1P47902 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC12.06□□□□□ -0.48
CDX1P47902 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC12.06□□□□□ -0.48
CDX1P47902 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 AC004945.1-201ENST00000416738 983 ntBASIC12.06□□□□□ -0.48
CDX1P47902 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC12.06□□□□□ -0.48
CDX1P47902 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC12.06□□□□□ -0.48
CDX1P47902 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC12.06□□□□□ -0.48
CDX1P47902 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC12.06□□□□□ -0.48
CDX1P47902 AC009486.1-201ENST00000569860 813 ntBASIC12.06□□□□□ -0.48
CDX1P47902 AC124283.3-201ENST00000570869 594 ntBASIC12.06□□□□□ -0.48
CDX1P47902 TBCB-211ENST00000589996 724 ntTSL 3 BASIC12.06□□□□□ -0.48
CDX1P47902 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC12.06□□□□□ -0.48
CDX1P47902 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC12.06□□□□□ -0.48
CDX1P47902 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC12.06□□□□□ -0.48
CDX1P47902 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC12.06□□□□□ -0.48
CDX1P47902 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
CDX1P47902 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 TMPRSS13-202ENST00000445164 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
CDX1P47902 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
CDX1P47902 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CDX1P47902 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms