Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.06■□□□□ 0.32
BRCA1P38398 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC17.06■□□□□ 0.32
BRCA1P38398 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
BRCA1P38398 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC17.05■□□□□ 0.32
BRCA1P38398 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC17.05■□□□□ 0.32
BRCA1P38398 AC005722.1-201ENST00000431878 964 ntBASIC17.05■□□□□ 0.32
BRCA1P38398 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC17.05■□□□□ 0.32
BRCA1P38398 TMA16-204ENST00000508268 608 ntTSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC17.05■□□□□ 0.32
BRCA1P38398 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 CDC37P2-201ENST00000562287 1029 ntBASIC17.05■□□□□ 0.32
BRCA1P38398 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC17.05■□□□□ 0.32
BRCA1P38398 RN7SL480P-201ENST00000581481 294 ntBASIC17.05■□□□□ 0.32
BRCA1P38398 NAT9-219ENST00000582524 573 ntTSL 4 BASIC17.05■□□□□ 0.32
BRCA1P38398 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC17.05■□□□□ 0.32
BRCA1P38398 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC17.05■□□□□ 0.32
BRCA1P38398 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC17.05■□□□□ 0.32
BRCA1P38398 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.05■□□□□ 0.32
BRCA1P38398 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
BRCA1P38398 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC17.05■□□□□ 0.32
BRCA1P38398 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC17.05■□□□□ 0.32
BRCA1P38398 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.05■□□□□ 0.32
BRCA1P38398 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC17.05■□□□□ 0.32
BRCA1P38398 RN7SL69P-201ENST00000468423 272 ntBASIC17.05■□□□□ 0.32
BRCA1P38398 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC17.05■□□□□ 0.32
BRCA1P38398 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC17.05■□□□□ 0.32
BRCA1P38398 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC17.05■□□□□ 0.32
BRCA1P38398 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
BRCA1P38398 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BRCA1P38398 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
BRCA1P38398 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
BRCA1P38398 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BRCA1P38398 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
BRCA1P38398 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.04■□□□□ 0.32
BRCA1P38398 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC17.04■□□□□ 0.32
BRCA1P38398 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC17.04■□□□□ 0.32
BRCA1P38398 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BRCA1P38398 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
BRCA1P38398 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
BRCA1P38398 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
BRCA1P38398 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BRCA1P38398 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC17.04■□□□□ 0.32
BRCA1P38398 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
BRCA1P38398 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC17.04■□□□□ 0.32
BRCA1P38398 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC17.04■□□□□ 0.32
BRCA1P38398 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC17.04■□□□□ 0.32
BRCA1P38398 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BRCA1P38398 AC138627.1-201ENST00000641127 1257 ntBASIC17.04■□□□□ 0.32
BRCA1P38398 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC17.04■□□□□ 0.32
BRCA1P38398 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
BRCA1P38398 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
BRCA1P38398 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BRCA1P38398 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.04■□□□□ 0.32
BRCA1P38398 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.04■□□□□ 0.32
BRCA1P38398 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BRCA1P38398 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
BRCA1P38398 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.04■□□□□ 0.32
BRCA1P38398 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC17.04■□□□□ 0.32
BRCA1P38398 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
BRCA1P38398 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BRCA1P38398 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 MIR1307-201ENST00000408840 149 ntBASIC17.03■□□□□ 0.32
BRCA1P38398 AC093495.1-201ENST00000420253 1067 ntTSL 4 BASIC17.03■□□□□ 0.32
BRCA1P38398 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC17.03■□□□□ 0.32
BRCA1P38398 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC17.03■□□□□ 0.32
BRCA1P38398 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BRCA1P38398 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC17.03■□□□□ 0.32
BRCA1P38398 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms