Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC16.66■□□□□ 0.26
SCN4AP35499 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 MEP1AP1-201ENST00000636082 1097 ntBASIC16.66■□□□□ 0.26
SCN4AP35499 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC16.66■□□□□ 0.26
SCN4AP35499 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
SCN4AP35499 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SCN4AP35499 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
SCN4AP35499 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 PRAL-201ENST00000624952 3286 ntBASIC16.66■□□□□ 0.26
SCN4AP35499 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC16.66■□□□□ 0.26
SCN4AP35499 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.66■□□□□ 0.26
SCN4AP35499 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.66■□□□□ 0.26
SCN4AP35499 AC015909.5-201ENST00000624336 2266 ntBASIC16.66■□□□□ 0.26
SCN4AP35499 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
SCN4AP35499 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 MIR632-201ENST00000385193 94 ntBASIC16.66■□□□□ 0.26
SCN4AP35499 KRT18P44-201ENST00000416086 1285 ntBASIC16.66■□□□□ 0.26
SCN4AP35499 SRPK2P-201ENST00000523408 1100 ntBASIC16.66■□□□□ 0.26
SCN4AP35499 AL512310.5-201ENST00000551999 515 ntBASIC16.66■□□□□ 0.26
SCN4AP35499 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC16.66■□□□□ 0.26
SCN4AP35499 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SCN4AP35499 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC16.66■□□□□ 0.26
SCN4AP35499 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SCN4AP35499 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.65■□□□□ 0.26
SCN4AP35499 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.65■□□□□ 0.26
SCN4AP35499 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.65■□□□□ 0.26
SCN4AP35499 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 AL365203.3-201ENST00000609742 2057 ntBASIC16.65■□□□□ 0.26
SCN4AP35499 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.65■□□□□ 0.26
SCN4AP35499 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 MIR1226-201ENST00000408658 75 ntBASIC16.65■□□□□ 0.26
SCN4AP35499 CD37-203ENST00000426897 1204 ntTSL 2 BASIC16.65■□□□□ 0.26
SCN4AP35499 YY1P2-201ENST00000438766 948 ntBASIC16.65■□□□□ 0.26
SCN4AP35499 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC16.65■□□□□ 0.26
SCN4AP35499 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 MYL6-215ENST00000549566 685 ntTSL 2 BASIC16.65■□□□□ 0.26
SCN4AP35499 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC16.65■□□□□ 0.26
SCN4AP35499 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
SCN4AP35499 AC103702.1-201ENST00000548801 2630 ntBASIC16.65■□□□□ 0.26
SCN4AP35499 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC16.65■□□□□ 0.26
SCN4AP35499 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SCN4AP35499 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.65■□□□□ 0.26
SCN4AP35499 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SCN4AP35499 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.65■□□□□ 0.26
SCN4AP35499 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCN4AP35499 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
SCN4AP35499 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC16.64■□□□□ 0.26
SCN4AP35499 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.64■□□□□ 0.25
SCN4AP35499 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
SCN4AP35499 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SCN4AP35499 BX088651.3-201ENST00000418155 352 ntBASIC16.64■□□□□ 0.25
SCN4AP35499 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC16.64■□□□□ 0.25
SCN4AP35499 AC093106.1-201ENST00000437271 352 ntBASIC16.64■□□□□ 0.25
SCN4AP35499 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC16.64■□□□□ 0.25
SCN4AP35499 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC16.64■□□□□ 0.25
SCN4AP35499 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC16.64■□□□□ 0.25
SCN4AP35499 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC16.64■□□□□ 0.25
SCN4AP35499 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC16.64■□□□□ 0.25
SCN4AP35499 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.64■□□□□ 0.25
SCN4AP35499 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.64■□□□□ 0.25
SCN4AP35499 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.64■□□□□ 0.25
SCN4AP35499 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SCN4AP35499 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCN4AP35499 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms