Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 GOLGA2P7-209ENST00000560408 745 ntBASIC13.65□□□□□ -0.22
COL5A1P20908 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC13.65□□□□□ -0.22
COL5A1P20908 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 AP000769.1-203ENST00000637245 208 ntBASIC13.65□□□□□ -0.22
COL5A1P20908 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.65□□□□□ -0.22
COL5A1P20908 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 PHB-210ENST00000511832 1509 ntTSL 2 BASIC13.65□□□□□ -0.22
COL5A1P20908 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
COL5A1P20908 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC13.65□□□□□ -0.22
COL5A1P20908 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 MYADML-201ENST00000474610 2147 ntBASIC13.65□□□□□ -0.22
COL5A1P20908 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
COL5A1P20908 AC090505.1-201ENST00000430515 1834 ntBASIC13.65□□□□□ -0.22
COL5A1P20908 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.65□□□□□ -0.22
COL5A1P20908 AC232323.1-201ENST00000540724 2099 ntBASIC13.65□□□□□ -0.22
COL5A1P20908 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.23
COL5A1P20908 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
COL5A1P20908 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.64□□□□□ -0.23
COL5A1P20908 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 AC022080.1-201ENST00000366255 781 ntBASIC13.64□□□□□ -0.23
COL5A1P20908 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
COL5A1P20908 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 KRT18P62-201ENST00000446618 1287 ntBASIC13.64□□□□□ -0.23
COL5A1P20908 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC13.64□□□□□ -0.23
COL5A1P20908 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC13.64□□□□□ -0.23
COL5A1P20908 AL160191.2-201ENST00000603975 601 ntBASIC13.64□□□□□ -0.23
COL5A1P20908 MME-218ENST00000625667 363 ntTSL 5 BASIC13.64□□□□□ -0.23
COL5A1P20908 RARS-210ENST00000626454 177 ntTSL 5 BASIC13.64□□□□□ -0.23
COL5A1P20908 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC13.64□□□□□ -0.23
COL5A1P20908 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC13.64□□□□□ -0.23
COL5A1P20908 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.64□□□□□ -0.23
COL5A1P20908 AL365181.1-201ENST00000564032 1828 ntBASIC13.64□□□□□ -0.23
COL5A1P20908 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
COL5A1P20908 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.64□□□□□ -0.23
COL5A1P20908 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
COL5A1P20908 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.64□□□□□ -0.23
COL5A1P20908 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.64□□□□□ -0.23
COL5A1P20908 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC13.64□□□□□ -0.23
COL5A1P20908 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.64□□□□□ -0.23
COL5A1P20908 AL596257.1-201ENST00000641463 2694 ntBASIC13.64□□□□□ -0.23
COL5A1P20908 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
COL5A1P20908 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 ABCD1P4-201ENST00000399687 604 ntBASIC13.64□□□□□ -0.23
COL5A1P20908 HLA-DPA2-205ENST00000433582 733 ntBASIC13.64□□□□□ -0.23
COL5A1P20908 AC090136.2-201ENST00000517809 420 ntBASIC13.64□□□□□ -0.23
COL5A1P20908 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC13.64□□□□□ -0.23
COL5A1P20908 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC13.64□□□□□ -0.23
COL5A1P20908 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
COL5A1P20908 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC13.64□□□□□ -0.23
COL5A1P20908 CES1P2-201ENST00000566467 1242 ntBASIC13.64□□□□□ -0.23
COL5A1P20908 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.64□□□□□ -0.23
COL5A1P20908 AL136982.5-201ENST00000605222 294 ntBASIC13.64□□□□□ -0.23
COL5A1P20908 AC018695.6-201ENST00000614011 534 ntBASIC13.64□□□□□ -0.23
COL5A1P20908 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 AC113367.3-201ENST00000508316 1912 ntBASIC13.64□□□□□ -0.23
COL5A1P20908 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.64□□□□□ -0.23
COL5A1P20908 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL5A1P20908 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC13.64□□□□□ -0.23
COL5A1P20908 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL5A1P20908 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.63□□□□□ -0.23
COL5A1P20908 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.63□□□□□ -0.23
COL5A1P20908 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL5A1P20908 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms