Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC14.92□□□□□ -0.02
COL9A1P20849 AC131206.1-201ENST00000538078 1211 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
COL9A1P20849 AL592146.2-201ENST00000565388 444 ntTSL 5 BASIC14.92□□□□□ -0.02
COL9A1P20849 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 AC016590.1-201ENST00000588763 420 ntTSL 2 BASIC14.92□□□□□ -0.02
COL9A1P20849 AC006116.2-201ENST00000589958 988 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 AC063950.1-202ENST00000600133 568 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 AC009884.2-201ENST00000603110 324 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC14.92□□□□□ -0.02
COL9A1P20849 CSTP2-201ENST00000610599 398 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 AL118522.1-201ENST00000611368 560 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 RAN-210ENST00000541630 1475 ntTSL 2 BASIC14.92□□□□□ -0.02
COL9A1P20849 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.92□□□□□ -0.02
COL9A1P20849 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 SSR4P1-203ENST00000599569 2260 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
COL9A1P20849 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.92□□□□□ -0.02
COL9A1P20849 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
COL9A1P20849 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.92□□□□□ -0.02
COL9A1P20849 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.92□□□□□ -0.02
COL9A1P20849 AC126365.1-201ENST00000578585 1514 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
COL9A1P20849 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL9A1P20849 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.91□□□□□ -0.02
COL9A1P20849 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL9A1P20849 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
COL9A1P20849 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL9A1P20849 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL9A1P20849 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC14.91□□□□□ -0.02
COL9A1P20849 AL157823.1-201ENST00000403727 628 ntBASIC14.91□□□□□ -0.02
COL9A1P20849 SAP18P2-201ENST00000434334 459 ntBASIC14.91□□□□□ -0.02
COL9A1P20849 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC14.91□□□□□ -0.02
COL9A1P20849 POLR2LP1-206ENST00000444785 187 ntBASIC14.91□□□□□ -0.02
COL9A1P20849 BPIFB5P-201ENST00000457066 1099 ntBASIC14.91□□□□□ -0.02
COL9A1P20849 RPS18P9-201ENST00000482817 460 ntBASIC14.91□□□□□ -0.02
COL9A1P20849 AC093826.1-201ENST00000508655 993 ntBASIC14.91□□□□□ -0.02
COL9A1P20849 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC14.91□□□□□ -0.02
COL9A1P20849 AC068867.1-201ENST00000559855 150 ntBASIC14.91□□□□□ -0.02
COL9A1P20849 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL9A1P20849 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC14.91□□□□□ -0.02
COL9A1P20849 AC008972.2-201ENST00000606587 494 ntBASIC14.91□□□□□ -0.02
COL9A1P20849 BX088702.1-201ENST00000610784 235 ntBASIC14.91□□□□□ -0.02
COL9A1P20849 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC14.91□□□□□ -0.02
COL9A1P20849 LINC01108-202ENST00000635227 776 ntTSL 3 BASIC14.91□□□□□ -0.02
COL9A1P20849 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL9A1P20849 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL9A1P20849 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC14.91□□□□□ -0.02
COL9A1P20849 AC007292.2-201ENST00000593524 1812 ntBASIC14.91□□□□□ -0.02
COL9A1P20849 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC14.91□□□□□ -0.02
COL9A1P20849 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL9A1P20849 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL9A1P20849 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL9A1P20849 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL9A1P20849 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
COL9A1P20849 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL9A1P20849 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
COL9A1P20849 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.9□□□□□ -0.02
COL9A1P20849 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.9□□□□□ -0.02
COL9A1P20849 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 MAPK10-379ENST00000642013 1385 ntBASIC14.9□□□□□ -0.02
COL9A1P20849 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.9□□□□□ -0.02
COL9A1P20849 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
COL9A1P20849 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
COL9A1P20849 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC14.9□□□□□ -0.02
COL9A1P20849 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC14.9□□□□□ -0.02
COL9A1P20849 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC14.9□□□□□ -0.02
COL9A1P20849 SNRPCP15-201ENST00000424055 192 ntBASIC14.9□□□□□ -0.02
COL9A1P20849 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC14.9□□□□□ -0.02
COL9A1P20849 CDCA4P4-201ENST00000435216 680 ntBASIC14.9□□□□□ -0.02
COL9A1P20849 AC006328.1-201ENST00000437571 379 ntBASIC14.9□□□□□ -0.02
COL9A1P20849 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC14.9□□□□□ -0.02
COL9A1P20849 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC14.9□□□□□ -0.02
COL9A1P20849 STK24P1-201ENST00000455035 1291 ntBASIC14.9□□□□□ -0.02
COL9A1P20849 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC14.9□□□□□ -0.02
COL9A1P20849 AC006122.1-201ENST00000493323 440 ntBASIC14.9□□□□□ -0.02
COL9A1P20849 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC14.9□□□□□ -0.02
COL9A1P20849 SRPK2P-201ENST00000523408 1100 ntBASIC14.9□□□□□ -0.02
COL9A1P20849 AP001830.1-201ENST00000528717 692 ntTSL 2 BASIC14.9□□□□□ -0.02
COL9A1P20849 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
COL9A1P20849 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 TPST2P1-201ENST00000564073 1102 ntBASIC14.9□□□□□ -0.02
COL9A1P20849 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC14.9□□□□□ -0.02
COL9A1P20849 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC14.9□□□□□ -0.02
COL9A1P20849 AP001198.2-201ENST00000593121 466 ntTSL 2 BASIC14.9□□□□□ -0.02
COL9A1P20849 AC112220.4-201ENST00000604982 1263 ntBASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms