Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC16.9■□□□□ 0.3
LIG1P18858 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG1P18858 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG1P18858 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG1P18858 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG1P18858 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG1P18858 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
LIG1P18858 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG1P18858 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG1P18858 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG1P18858 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
LIG1P18858 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
LIG1P18858 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC16.9■□□□□ 0.3
LIG1P18858 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG1P18858 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG1P18858 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LIG1P18858 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LIG1P18858 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LIG1P18858 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
LIG1P18858 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIG1P18858 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC16.89■□□□□ 0.29
LIG1P18858 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG1P18858 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
LIG1P18858 DDC-213ENST00000617822 1809 ntTSL 3 BASIC16.89■□□□□ 0.29
LIG1P18858 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG1P18858 AC015688.4-201ENST00000580780 1647 ntBASIC16.89■□□□□ 0.29
LIG1P18858 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.89■□□□□ 0.29
LIG1P18858 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
LIG1P18858 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG1P18858 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
LIG1P18858 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG1P18858 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
LIG1P18858 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIG1P18858 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG1P18858 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.89■□□□□ 0.29
LIG1P18858 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.89■□□□□ 0.29
LIG1P18858 KLF2P2-201ENST00000416807 1039 ntBASIC16.89■□□□□ 0.29
LIG1P18858 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.89■□□□□ 0.29
LIG1P18858 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.89■□□□□ 0.29
LIG1P18858 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.89■□□□□ 0.29
LIG1P18858 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.89■□□□□ 0.29
LIG1P18858 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.89■□□□□ 0.29
LIG1P18858 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.89■□□□□ 0.29
LIG1P18858 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIG1P18858 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
LIG1P18858 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.89■□□□□ 0.29
LIG1P18858 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.89■□□□□ 0.29
LIG1P18858 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.89■□□□□ 0.29
LIG1P18858 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.89■□□□□ 0.29
LIG1P18858 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.89■□□□□ 0.29
LIG1P18858 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC16.89■□□□□ 0.29
LIG1P18858 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
LIG1P18858 PPT1-213ENST00000641319 2388 ntBASIC16.89■□□□□ 0.29
LIG1P18858 CICP20-201ENST00000443330 2801 ntBASIC16.89■□□□□ 0.29
LIG1P18858 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG1P18858 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIG1P18858 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC16.89■□□□□ 0.29
LIG1P18858 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIG1P18858 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC16.89■□□□□ 0.29
LIG1P18858 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG1P18858 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.89■□□□□ 0.29
LIG1P18858 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC16.89■□□□□ 0.29
LIG1P18858 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC16.88■□□□□ 0.29
LIG1P18858 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
LIG1P18858 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.88■□□□□ 0.29
LIG1P18858 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LIG1P18858 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC16.88■□□□□ 0.29
LIG1P18858 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC16.88■□□□□ 0.29
LIG1P18858 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
LIG1P18858 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC16.88■□□□□ 0.29
LIG1P18858 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
LIG1P18858 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.88■□□□□ 0.29
LIG1P18858 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.88■□□□□ 0.29
LIG1P18858 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LIG1P18858 AP001889.1-201ENST00000525414 633 ntBASIC16.88■□□□□ 0.29
LIG1P18858 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.88■□□□□ 0.29
LIG1P18858 AC131206.1-201ENST00000538078 1211 ntBASIC16.88■□□□□ 0.29
LIG1P18858 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.88■□□□□ 0.29
LIG1P18858 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.88■□□□□ 0.29
LIG1P18858 AL512343.1-201ENST00000605837 169 ntBASIC16.88■□□□□ 0.29
LIG1P18858 AL162274.1-201ENST00000617191 1098 ntBASIC16.88■□□□□ 0.29
LIG1P18858 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LIG1P18858 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms