Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 JTB-202ENST00000356648 1040 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 MIR557-201ENST00000385239 98 ntBASIC17.13■□□□□ 0.33
HLA-DOAP06340 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 AC114947.1-202ENST00000514136 344 ntBASIC17.13■□□□□ 0.33
HLA-DOAP06340 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 AC007326.1-201ENST00000604539 458 ntBASIC17.13■□□□□ 0.33
HLA-DOAP06340 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 AL805961.1-201ENST00000642026 753 ntBASIC17.13■□□□□ 0.33
HLA-DOAP06340 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 AC074138.1-201ENST00000611182 1303 ntBASIC17.13■□□□□ 0.33
HLA-DOAP06340 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DOAP06340 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 KRT8P31-201ENST00000504812 1408 ntBASIC17.13■□□□□ 0.33
HLA-DOAP06340 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DOAP06340 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 LAP3P2-201ENST00000454686 1454 ntBASIC17.12■□□□□ 0.33
HLA-DOAP06340 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 AP000356.3-201ENST00000382243 753 ntBASIC17.12■□□□□ 0.33
HLA-DOAP06340 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 AL807761.2-201ENST00000422849 729 ntBASIC17.12■□□□□ 0.33
HLA-DOAP06340 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 COX6A1P2-201ENST00000620597 330 ntBASIC17.12■□□□□ 0.33
HLA-DOAP06340 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.12■□□□□ 0.33
HLA-DOAP06340 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DOAP06340 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms