Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.18□□□□□ -0.14
CLDN9O95484 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
CLDN9O95484 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CLDN9O95484 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
CLDN9O95484 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.18□□□□□ -0.14
CLDN9O95484 MIR4683-201ENST00000579659 81 ntBASIC14.18□□□□□ -0.14
CLDN9O95484 AC008825.2-201ENST00000603374 718 ntBASIC14.18□□□□□ -0.14
CLDN9O95484 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.18□□□□□ -0.14
CLDN9O95484 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.18□□□□□ -0.14
CLDN9O95484 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.18□□□□□ -0.14
CLDN9O95484 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.18□□□□□ -0.14
CLDN9O95484 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.18□□□□□ -0.14
CLDN9O95484 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.18□□□□□ -0.14
CLDN9O95484 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CLDN9O95484 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CLDN9O95484 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CLDN9O95484 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
CLDN9O95484 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.17□□□□□ -0.14
CLDN9O95484 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CLDN9O95484 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CLDN9O95484 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 AC010327.5-201ENST00000586923 3061 ntBASIC14.17□□□□□ -0.14
CLDN9O95484 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.17□□□□□ -0.14
CLDN9O95484 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.17□□□□□ -0.14
CLDN9O95484 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CLDN9O95484 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.17□□□□□ -0.14
CLDN9O95484 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CLDN9O95484 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CLDN9O95484 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.17□□□□□ -0.14
CLDN9O95484 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.17□□□□□ -0.14
CLDN9O95484 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.17□□□□□ -0.14
CLDN9O95484 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.17□□□□□ -0.14
CLDN9O95484 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CLDN9O95484 AC027237.1-201ENST00000560942 655 ntBASIC14.17□□□□□ -0.14
CLDN9O95484 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.17□□□□□ -0.14
CLDN9O95484 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.17□□□□□ -0.14
CLDN9O95484 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.17□□□□□ -0.14
CLDN9O95484 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 AC126335.2-201ENST00000623362 4637 ntBASIC14.17□□□□□ -0.14
CLDN9O95484 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.17□□□□□ -0.14
CLDN9O95484 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
CLDN9O95484 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLDN9O95484 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CLDN9O95484 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.17□□□□□ -0.14
CLDN9O95484 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CLDN9O95484 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.16□□□□□ -0.14
CLDN9O95484 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CLDN9O95484 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.16□□□□□ -0.14
CLDN9O95484 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
CLDN9O95484 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 AC006001.1-201ENST00000325130 474 ntBASIC14.16□□□□□ -0.14
CLDN9O95484 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CLDN9O95484 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
CLDN9O95484 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLDN9O95484 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.16□□□□□ -0.14
CLDN9O95484 AL136309.1-201ENST00000403917 691 ntBASIC14.16□□□□□ -0.14
CLDN9O95484 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.16□□□□□ -0.14
CLDN9O95484 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.16□□□□□ -0.14
CLDN9O95484 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms