Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC17.01■□□□□ 0.31
CDKL5O76039 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CDKL5O76039 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.01■□□□□ 0.31
CDKL5O76039 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 AL161932.2-201ENST00000435436 679 ntBASIC17.01■□□□□ 0.31
CDKL5O76039 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC17.01■□□□□ 0.31
CDKL5O76039 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.01■□□□□ 0.31
CDKL5O76039 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.01■□□□□ 0.31
CDKL5O76039 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC17.01■□□□□ 0.31
CDKL5O76039 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 FUK-202ENST00000378912 3925 ntTSL 2 BASIC17.01■□□□□ 0.31
CDKL5O76039 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 HSPA8P5-201ENST00000456928 2069 ntBASIC17.01■□□□□ 0.31
CDKL5O76039 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.01■□□□□ 0.31
CDKL5O76039 AL023775.1-201ENST00000454907 1746 ntBASIC17.01■□□□□ 0.31
CDKL5O76039 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC17.01■□□□□ 0.31
CDKL5O76039 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.01■□□□□ 0.31
CDKL5O76039 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC17.01■□□□□ 0.31
CDKL5O76039 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CDKL5O76039 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC17.01■□□□□ 0.31
CDKL5O76039 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CDKL5O76039 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
CDKL5O76039 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC17■□□□□ 0.31
CDKL5O76039 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC17■□□□□ 0.31
CDKL5O76039 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CDKL5O76039 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC17■□□□□ 0.31
CDKL5O76039 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CDKL5O76039 ANKRD19P-201ENST00000338192 862 ntBASIC17■□□□□ 0.31
CDKL5O76039 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17■□□□□ 0.31
CDKL5O76039 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CDKL5O76039 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17■□□□□ 0.31
CDKL5O76039 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17■□□□□ 0.31
CDKL5O76039 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17■□□□□ 0.31
CDKL5O76039 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC17■□□□□ 0.31
CDKL5O76039 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17■□□□□ 0.31
CDKL5O76039 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
CDKL5O76039 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDKL5O76039 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDKL5O76039 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CDKL5O76039 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC16.99■□□□□ 0.31
CDKL5O76039 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDKL5O76039 AL928921.2-201ENST00000641325 2442 ntBASIC16.99■□□□□ 0.31
CDKL5O76039 ST20-AS1-201ENST00000560255 4223 ntBASIC16.99■□□□□ 0.31
CDKL5O76039 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDKL5O76039 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.99■□□□□ 0.31
CDKL5O76039 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CDKL5O76039 E2F3P2-201ENST00000447755 1422 ntBASIC16.99■□□□□ 0.31
CDKL5O76039 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
CDKL5O76039 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDKL5O76039 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDKL5O76039 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDKL5O76039 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.99■□□□□ 0.31
CDKL5O76039 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDKL5O76039 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDKL5O76039 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
CDKL5O76039 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC16.99■□□□□ 0.31
CDKL5O76039 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.99■□□□□ 0.31
CDKL5O76039 YBX1P6-201ENST00000442962 1002 ntBASIC16.99■□□□□ 0.31
CDKL5O76039 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDKL5O76039 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC16.99■□□□□ 0.31
CDKL5O76039 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC16.99■□□□□ 0.31
CDKL5O76039 SNX29P1-201ENST00000548357 1007 ntBASIC16.99■□□□□ 0.31
CDKL5O76039 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.99■□□□□ 0.31
CDKL5O76039 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16.99■□□□□ 0.31
CDKL5O76039 AP005482.1-201ENST00000563722 1273 ntBASIC16.99■□□□□ 0.31
CDKL5O76039 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.99■□□□□ 0.31
CDKL5O76039 AC104506.1-201ENST00000609247 429 ntBASIC16.99■□□□□ 0.31
CDKL5O76039 AC244157.2-201ENST00000616239 1006 ntBASIC16.99■□□□□ 0.31
CDKL5O76039 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms