Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 RPL28-206ENST00000558752 671 ntTSL 3 BASIC13.88□□□□□ -0.19
UPK1AO00322 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
UPK1AO00322 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.88□□□□□ -0.19
UPK1AO00322 BX088702.1-201ENST00000610784 235 ntBASIC13.88□□□□□ -0.19
UPK1AO00322 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
UPK1AO00322 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
UPK1AO00322 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.88□□□□□ -0.19
UPK1AO00322 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
UPK1AO00322 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.88□□□□□ -0.19
UPK1AO00322 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC13.88□□□□□ -0.19
UPK1AO00322 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
UPK1AO00322 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
UPK1AO00322 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
UPK1AO00322 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
UPK1AO00322 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
UPK1AO00322 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
UPK1AO00322 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
UPK1AO00322 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
UPK1AO00322 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
UPK1AO00322 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC13.88□□□□□ -0.19
UPK1AO00322 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
UPK1AO00322 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.88□□□□□ -0.19
UPK1AO00322 AC126755.1-201ENST00000525846 6405 ntBASIC13.88□□□□□ -0.19
UPK1AO00322 AGAP10P-201ENST00000454844 2418 ntBASIC13.88□□□□□ -0.19
UPK1AO00322 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
UPK1AO00322 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC13.87□□□□□ -0.19
UPK1AO00322 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC13.87□□□□□ -0.19
UPK1AO00322 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC13.87□□□□□ -0.19
UPK1AO00322 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
UPK1AO00322 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.87□□□□□ -0.19
UPK1AO00322 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
UPK1AO00322 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.87□□□□□ -0.19
UPK1AO00322 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.87□□□□□ -0.19
UPK1AO00322 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 RN7SKP175-201ENST00000408472 289 ntBASIC13.87□□□□□ -0.19
UPK1AO00322 AC004945.1-201ENST00000416738 983 ntBASIC13.87□□□□□ -0.19
UPK1AO00322 CD8B2-202ENST00000417670 633 ntBASIC13.87□□□□□ -0.19
UPK1AO00322 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.87□□□□□ -0.19
UPK1AO00322 CNN2P8-201ENST00000421872 913 ntBASIC13.87□□□□□ -0.19
UPK1AO00322 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.87□□□□□ -0.19
UPK1AO00322 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
UPK1AO00322 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.87□□□□□ -0.19
UPK1AO00322 AP003171.2-201ENST00000528208 925 ntBASIC13.87□□□□□ -0.19
UPK1AO00322 KRT90P-201ENST00000549264 1064 ntBASIC13.87□□□□□ -0.19
UPK1AO00322 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.87□□□□□ -0.19
UPK1AO00322 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.87□□□□□ -0.19
UPK1AO00322 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.87□□□□□ -0.19
UPK1AO00322 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC13.87□□□□□ -0.19
UPK1AO00322 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.87□□□□□ -0.19
UPK1AO00322 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.87□□□□□ -0.19
UPK1AO00322 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 AC005562.1-201ENST00000583030 3219 ntBASIC13.87□□□□□ -0.19
UPK1AO00322 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
UPK1AO00322 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC13.87□□□□□ -0.19
UPK1AO00322 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
UPK1AO00322 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
UPK1AO00322 AC019294.4-201ENST00000561777 2905 ntBASIC13.87□□□□□ -0.19
UPK1AO00322 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.87□□□□□ -0.19
UPK1AO00322 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC13.86□□□□□ -0.19
UPK1AO00322 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
UPK1AO00322 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
UPK1AO00322 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.86□□□□□ -0.19
UPK1AO00322 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
UPK1AO00322 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 HSPA8P5-201ENST00000456928 2069 ntBASIC13.86□□□□□ -0.19
UPK1AO00322 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
UPK1AO00322 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
UPK1AO00322 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms