Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 KRT8P24-201ENST00000560290 1559 ntBASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 AL035414.1-201ENST00000451327 857 ntBASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 COX5BP1-201ENST00000507622 393 ntBASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 AC078819.1-201ENST00000547454 765 ntBASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 AC012085.1-201ENST00000548270 765 ntBASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 MIR4683-201ENST00000579659 81 ntBASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 RN7SL713P-201ENST00000582127 302 ntBASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 AC008825.2-201ENST00000603374 718 ntBASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 AC244669.2-201ENST00000612320 853 ntBASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 KRT8P28-201ENST00000433288 1390 ntBASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 AC009093.10-201ENST00000641956 1442 ntBASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS29Q9UBQ0 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 AC010327.5-201ENST00000586923 3061 ntBASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 KRT90P-201ENST00000549264 1064 ntBASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 AC027237.1-201ENST00000560942 655 ntBASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 IGHV3-72-202ENST00000621503 303 ntBASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
VPS29Q9UBQ0 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms