Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
ERCC4Q92889 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC16.68■□□□□ 0.26
ERCC4Q92889 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
ERCC4Q92889 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.68■□□□□ 0.26
ERCC4Q92889 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.68■□□□□ 0.26
ERCC4Q92889 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.68■□□□□ 0.26
ERCC4Q92889 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
ERCC4Q92889 MYCLP2-201ENST00000449268 967 ntBASIC16.68■□□□□ 0.26
ERCC4Q92889 ELK1P1-201ENST00000485699 580 ntBASIC16.68■□□□□ 0.26
ERCC4Q92889 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.68■□□□□ 0.26
ERCC4Q92889 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.68■□□□□ 0.26
ERCC4Q92889 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
ERCC4Q92889 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
ERCC4Q92889 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 GOLGA8VP-201ENST00000559009 1798 ntBASIC16.68■□□□□ 0.26
ERCC4Q92889 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC16.68■□□□□ 0.26
ERCC4Q92889 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC16.67■□□□□ 0.26
ERCC4Q92889 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC16.67■□□□□ 0.26
ERCC4Q92889 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC16.67■□□□□ 0.26
ERCC4Q92889 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
ERCC4Q92889 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 AC011840.2-201ENST00000563063 1520 ntBASIC16.67■□□□□ 0.26
ERCC4Q92889 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
ERCC4Q92889 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.67■□□□□ 0.26
ERCC4Q92889 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.67■□□□□ 0.26
ERCC4Q92889 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 INGX-202ENST00000489074 768 ntBASIC16.67■□□□□ 0.26
ERCC4Q92889 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 WASH4P-201ENST00000564273 1246 ntBASIC16.67■□□□□ 0.26
ERCC4Q92889 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.67■□□□□ 0.26
ERCC4Q92889 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.67■□□□□ 0.26
ERCC4Q92889 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
ERCC4Q92889 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
ERCC4Q92889 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
ERCC4Q92889 COL6A4P2-202ENST00000504443 2753 ntBASIC16.67■□□□□ 0.26
ERCC4Q92889 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
ERCC4Q92889 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
ERCC4Q92889 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.67■□□□□ 0.26
ERCC4Q92889 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
ERCC4Q92889 AL365181.3-201ENST00000605886 3222 ntBASIC16.67■□□□□ 0.26
ERCC4Q92889 AC005252.3-201ENST00000623855 2258 ntBASIC16.67■□□□□ 0.26
ERCC4Q92889 AL359881.3-201ENST00000602640 1721 ntBASIC16.67■□□□□ 0.26
ERCC4Q92889 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.67■□□□□ 0.26
ERCC4Q92889 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
ERCC4Q92889 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
ERCC4Q92889 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
ERCC4Q92889 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ERCC4Q92889 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC16.66■□□□□ 0.26
ERCC4Q92889 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC16.66■□□□□ 0.26
ERCC4Q92889 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC16.66■□□□□ 0.26
ERCC4Q92889 AL157996.1-201ENST00000624684 2299 ntBASIC16.66■□□□□ 0.26
ERCC4Q92889 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
ERCC4Q92889 LINC02486-201ENST00000604157 3000 ntBASIC16.66■□□□□ 0.26
ERCC4Q92889 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
ERCC4Q92889 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
ERCC4Q92889 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.66■□□□□ 0.26
ERCC4Q92889 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.66■□□□□ 0.26
ERCC4Q92889 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ERCC4Q92889 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms