Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 AMT-239ENST00000636865 1914 ntTSL 5 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 AC009093.10-201ENST00000641956 1442 ntBASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 IGF1-203ENST00000392904 761 ntTSL 5 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 SCARNA20.5-201ENST00000516991 142 ntBASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 AL160314.3-201ENST00000556041 767 ntBASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 AC005324.6-201ENST00000587972 613 ntBASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 RPL35-206ENST00000629845 340 ntTSL 5 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 AC138028.6-201ENST00000616106 1482 ntBASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
SHROOM3Q8TF72 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 USP17L6P-201ENST00000382470 1197 ntBASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 AC022217.1-201ENST00000521069 738 ntBASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 AC244157.2-201ENST00000616239 1006 ntBASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 AC068587.8-201ENST00000641239 219 ntBASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 MST1P2-201ENST00000457982 2291 ntBASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 SDHD-202ENST00000525291 790 ntTSL 3 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SHROOM3Q8TF72 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms