Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 PCDHA3-202ENST00000532566 4594 ntBASIC14.14□□□□□ -0.15
COL28A1Q2UY09 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 CAP2P1-201ENST00000557743 1390 ntBASIC14.14□□□□□ -0.15
COL28A1Q2UY09 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 RPL8P2-201ENST00000430538 502 ntBASIC14.14□□□□□ -0.15
COL28A1Q2UY09 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 POU5F1P2-201ENST00000521750 823 ntBASIC14.14□□□□□ -0.15
COL28A1Q2UY09 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 TPM1-223ENST00000560445 485 ntTSL 3 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.14□□□□□ -0.15
COL28A1Q2UY09 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 CICP11-201ENST00000434745 2827 ntBASIC14.13□□□□□ -0.15
COL28A1Q2UY09 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 LINC01101-201ENST00000622953 1884 ntBASIC14.13□□□□□ -0.15
COL28A1Q2UY09 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 OR2K2-202ENST00000374428 1038 ntBASIC14.13□□□□□ -0.15
COL28A1Q2UY09 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 AL136309.1-201ENST00000403917 691 ntBASIC14.13□□□□□ -0.15
COL28A1Q2UY09 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 RN7SL67P-201ENST00000492147 296 ntBASIC14.13□□□□□ -0.15
COL28A1Q2UY09 ALG1L6P-201ENST00000515248 758 ntBASIC14.13□□□□□ -0.15
COL28A1Q2UY09 AP003398.1-201ENST00000531124 318 ntBASIC14.13□□□□□ -0.15
COL28A1Q2UY09 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 AC007191.1-201ENST00000623179 2995 ntBASIC14.13□□□□□ -0.15
COL28A1Q2UY09 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL28A1Q2UY09 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 AL109954.1-202ENST00000564051 2148 ntBASIC14.12□□□□□ -0.15
COL28A1Q2UY09 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL28A1Q2UY09 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms