Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PCDH1Q08174 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCDH1Q08174 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCDH1Q08174 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.15□□□□□ -0.14
PCDH1Q08174 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.15□□□□□ -0.14
PCDH1Q08174 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.15□□□□□ -0.14
PCDH1Q08174 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.15□□□□□ -0.14
PCDH1Q08174 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.15□□□□□ -0.14
PCDH1Q08174 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.15□□□□□ -0.14
PCDH1Q08174 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.15□□□□□ -0.14
PCDH1Q08174 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
PCDH1Q08174 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
PCDH1Q08174 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
PCDH1Q08174 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
PCDH1Q08174 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
PCDH1Q08174 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.15□□□□□ -0.14
PCDH1Q08174 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.15□□□□□ -0.14
PCDH1Q08174 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.15□□□□□ -0.14
PCDH1Q08174 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.15□□□□□ -0.14
PCDH1Q08174 AL161932.2-201ENST00000435436 679 ntBASIC14.15□□□□□ -0.14
PCDH1Q08174 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC14.15□□□□□ -0.14
PCDH1Q08174 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.15□□□□□ -0.14
PCDH1Q08174 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.15□□□□□ -0.14
PCDH1Q08174 CNN2P10-201ENST00000443067 918 ntBASIC14.15□□□□□ -0.14
PCDH1Q08174 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.15□□□□□ -0.14
PCDH1Q08174 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.15□□□□□ -0.14
PCDH1Q08174 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.15□□□□□ -0.14
PCDH1Q08174 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.15□□□□□ -0.14
PCDH1Q08174 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC14.15□□□□□ -0.14
PCDH1Q08174 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.15□□□□□ -0.14
PCDH1Q08174 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC14.15□□□□□ -0.14
PCDH1Q08174 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.15□□□□□ -0.14
PCDH1Q08174 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.15□□□□□ -0.14
PCDH1Q08174 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.15□□□□□ -0.14
PCDH1Q08174 AC008687.7-202ENST00000637404 953 ntBASIC14.15□□□□□ -0.14
PCDH1Q08174 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.15□□□□□ -0.14
PCDH1Q08174 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.15□□□□□ -0.14
PCDH1Q08174 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.15□□□□□ -0.14
PCDH1Q08174 AL354989.2-201ENST00000435838 1540 ntBASIC14.15□□□□□ -0.14
PCDH1Q08174 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
PCDH1Q08174 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCDH1Q08174 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.15
PCDH1Q08174 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
PCDH1Q08174 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
PCDH1Q08174 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PCDH1Q08174 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.14□□□□□ -0.15
PCDH1Q08174 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
PCDH1Q08174 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.14□□□□□ -0.15
PCDH1Q08174 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 AC011498.7-201ENST00000624986 2027 ntBASIC14.14□□□□□ -0.15
PCDH1Q08174 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.14□□□□□ -0.15
PCDH1Q08174 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
PCDH1Q08174 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
PCDH1Q08174 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.14□□□□□ -0.15
PCDH1Q08174 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
PCDH1Q08174 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.14□□□□□ -0.15
PCDH1Q08174 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.14□□□□□ -0.15
PCDH1Q08174 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
PCDH1Q08174 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.14□□□□□ -0.15
PCDH1Q08174 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.14□□□□□ -0.15
PCDH1Q08174 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PCDH1Q08174 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.14□□□□□ -0.15
PCDH1Q08174 NCK2-206ENST00000522586 490 ntTSL 5 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms