Protein–RNA interactions for Protein: P61758

VBP1, Prefoldin subunit 3, humanhuman

Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VBP1P61758 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
VBP1P61758 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
VBP1P61758 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
VBP1P61758 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
VBP1P61758 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
VBP1P61758 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
VBP1P61758 SPDYE17-201ENST00000412399 783 ntBASIC13.17□□□□□ -0.3
VBP1P61758 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC13.17□□□□□ -0.3
VBP1P61758 KRT18P67-201ENST00000432816 1264 ntBASIC13.17□□□□□ -0.3
VBP1P61758 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 AC074386.1-202ENST00000463561 864 ntBASIC13.17□□□□□ -0.3
VBP1P61758 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC13.17□□□□□ -0.3
VBP1P61758 AC004066.1-201ENST00000502488 802 ntBASIC13.17□□□□□ -0.3
VBP1P61758 SMN2-210ENST00000511812 867 ntTSL 2 BASIC13.17□□□□□ -0.3
VBP1P61758 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC13.17□□□□□ -0.3
VBP1P61758 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC13.17□□□□□ -0.3
VBP1P61758 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
VBP1P61758 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC13.17□□□□□ -0.3
VBP1P61758 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC13.17□□□□□ -0.3
VBP1P61758 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC13.17□□□□□ -0.3
VBP1P61758 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 IMPDH1P4-201ENST00000445028 1534 ntBASIC13.17□□□□□ -0.3
VBP1P61758 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC13.17□□□□□ -0.3
VBP1P61758 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 AC027369.3-201ENST00000530465 3707 ntBASIC13.17□□□□□ -0.3
VBP1P61758 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VBP1P61758 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC13.17□□□□□ -0.3
VBP1P61758 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
VBP1P61758 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC13.17□□□□□ -0.3
VBP1P61758 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC13.17□□□□□ -0.3
VBP1P61758 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
VBP1P61758 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.16□□□□□ -0.3
VBP1P61758 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC13.16□□□□□ -0.3
VBP1P61758 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 KRT8P35-201ENST00000483942 1338 ntBASIC13.16□□□□□ -0.3
VBP1P61758 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
VBP1P61758 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
VBP1P61758 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC13.16□□□□□ -0.3
VBP1P61758 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
VBP1P61758 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC13.16□□□□□ -0.3
VBP1P61758 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
VBP1P61758 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC13.16□□□□□ -0.3
VBP1P61758 HLA-K-203ENST00000430151 1046 ntBASIC13.16□□□□□ -0.3
VBP1P61758 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC13.16□□□□□ -0.3
VBP1P61758 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
VBP1P61758 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.16□□□□□ -0.3
VBP1P61758 SKP2-204ENST00000508514 821 ntTSL 3 BASIC13.16□□□□□ -0.3
VBP1P61758 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC13.16□□□□□ -0.3
VBP1P61758 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC13.16□□□□□ -0.3
VBP1P61758 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC13.16□□□□□ -0.3
VBP1P61758 TBCB-205ENST00000585746 875 ntTSL 3 BASIC13.16□□□□□ -0.3
VBP1P61758 SSH2-211ENST00000590153 570 ntTSL 4 BASIC13.16□□□□□ -0.3
VBP1P61758 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC13.16□□□□□ -0.3
VBP1P61758 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
VBP1P61758 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.16□□□□□ -0.3
VBP1P61758 HFE2-206ENST00000634927 506 ntTSL 4 BASIC13.16□□□□□ -0.3
VBP1P61758 AF228730.6-201ENST00000641497 218 ntBASIC13.16□□□□□ -0.3
VBP1P61758 AC084121.3-201ENST00000641716 218 ntBASIC13.16□□□□□ -0.3
VBP1P61758 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC13.16□□□□□ -0.3
VBP1P61758 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
VBP1P61758 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
VBP1P61758 LINC02486-201ENST00000604157 3000 ntBASIC13.16□□□□□ -0.3
VBP1P61758 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
VBP1P61758 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VBP1P61758 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
VBP1P61758 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms