Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.33■□□□□ 0.04
HDAC4P56524 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.33■□□□□ 0.04
HDAC4P56524 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.33■□□□□ 0.04
HDAC4P56524 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
HDAC4P56524 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC15.33■□□□□ 0.04
HDAC4P56524 DUX4L45-201ENST00000566406 1057 ntBASIC15.33■□□□□ 0.04
HDAC4P56524 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
HDAC4P56524 AC133552.6-201ENST00000613406 534 ntBASIC15.33■□□□□ 0.04
HDAC4P56524 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC15.33■□□□□ 0.04
HDAC4P56524 MIR6805-201ENST00000615055 62 ntBASIC15.33■□□□□ 0.04
HDAC4P56524 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.33■□□□□ 0.04
HDAC4P56524 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15.33■□□□□ 0.04
HDAC4P56524 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.33■□□□□ 0.04
HDAC4P56524 CR383656.2-201ENST00000548656 2254 ntBASIC15.33■□□□□ 0.04
HDAC4P56524 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
HDAC4P56524 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC15.33■□□□□ 0.04
HDAC4P56524 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC4P56524 LINC01230-201ENST00000625222 3017 ntBASIC15.33■□□□□ 0.04
HDAC4P56524 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HDAC4P56524 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
HDAC4P56524 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HDAC4P56524 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 WARS-203ENST00000358655 2466 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
HDAC4P56524 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.32■□□□□ 0.04
HDAC4P56524 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.32■□□□□ 0.04
HDAC4P56524 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.32■□□□□ 0.04
HDAC4P56524 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 AC100850.1-201ENST00000506768 649 ntBASIC15.32■□□□□ 0.04
HDAC4P56524 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 MIR4783-201ENST00000580343 82 ntBASIC15.32■□□□□ 0.04
HDAC4P56524 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.32■□□□□ 0.04
HDAC4P56524 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.32■□□□□ 0.04
HDAC4P56524 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 MIR6074-201ENST00000612054 107 ntBASIC15.32■□□□□ 0.04
HDAC4P56524 AC027601.3-201ENST00000622907 509 ntBASIC15.32■□□□□ 0.04
HDAC4P56524 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.32■□□□□ 0.04
HDAC4P56524 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
HDAC4P56524 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.32■□□□□ 0.04
HDAC4P56524 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HDAC4P56524 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HDAC4P56524 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
HDAC4P56524 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
HDAC4P56524 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
HDAC4P56524 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC15.31■□□□□ 0.04
HDAC4P56524 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 AC005840.4-201ENST00000541242 2494 ntBASIC15.31■□□□□ 0.04
HDAC4P56524 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HDAC4P56524 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms