Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
LIM2P55344 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
LIM2P55344 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.9□□□□□ -0.18
LIM2P55344 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.9□□□□□ -0.18
LIM2P55344 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.9□□□□□ -0.18
LIM2P55344 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.9□□□□□ -0.18
LIM2P55344 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.9□□□□□ -0.18
LIM2P55344 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.9□□□□□ -0.18
LIM2P55344 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.9□□□□□ -0.18
LIM2P55344 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC13.9□□□□□ -0.18
LIM2P55344 MTX1P1-201ENST00000440904 838 ntBASIC13.9□□□□□ -0.18
LIM2P55344 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.9□□□□□ -0.18
LIM2P55344 RPSAP36-202ENST00000494591 1261 ntBASIC13.9□□□□□ -0.18
LIM2P55344 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.9□□□□□ -0.18
LIM2P55344 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC13.9□□□□□ -0.18
LIM2P55344 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
LIM2P55344 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.9□□□□□ -0.18
LIM2P55344 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC13.9□□□□□ -0.18
LIM2P55344 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 AC009955.4-201ENST00000597192 544 ntBASIC13.9□□□□□ -0.18
LIM2P55344 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.9□□□□□ -0.18
LIM2P55344 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.9□□□□□ -0.18
LIM2P55344 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.9□□□□□ -0.18
LIM2P55344 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
LIM2P55344 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
LIM2P55344 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.9□□□□□ -0.18
LIM2P55344 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.9□□□□□ -0.18
LIM2P55344 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.9□□□□□ -0.18
LIM2P55344 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LIM2P55344 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.9□□□□□ -0.19
LIM2P55344 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
LIM2P55344 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
LIM2P55344 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
LIM2P55344 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.89□□□□□ -0.19
LIM2P55344 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.89□□□□□ -0.19
LIM2P55344 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC13.89□□□□□ -0.19
LIM2P55344 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC13.89□□□□□ -0.19
LIM2P55344 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC13.89□□□□□ -0.19
LIM2P55344 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
LIM2P55344 FAM86HP-204ENST00000513466 959 ntBASIC13.89□□□□□ -0.19
LIM2P55344 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.89□□□□□ -0.19
LIM2P55344 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.89□□□□□ -0.19
LIM2P55344 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.89□□□□□ -0.19
LIM2P55344 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC13.89□□□□□ -0.19
LIM2P55344 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC13.89□□□□□ -0.19
LIM2P55344 MIR4783-201ENST00000580343 82 ntBASIC13.89□□□□□ -0.19
LIM2P55344 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.89□□□□□ -0.19
LIM2P55344 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.89□□□□□ -0.19
LIM2P55344 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
LIM2P55344 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.89□□□□□ -0.19
LIM2P55344 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
LIM2P55344 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.89□□□□□ -0.19
LIM2P55344 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
LIM2P55344 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.89□□□□□ -0.19
LIM2P55344 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
LIM2P55344 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
LIM2P55344 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 AC009093.10-201ENST00000641956 1442 ntBASIC13.89□□□□□ -0.19
LIM2P55344 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC13.89□□□□□ -0.19
LIM2P55344 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
LIM2P55344 TUBB1P2-201ENST00000422712 1306 ntBASIC13.89□□□□□ -0.19
LIM2P55344 TUBB1P1-201ENST00000503144 1300 ntBASIC13.89□□□□□ -0.19
LIM2P55344 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LIM2P55344 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
LIM2P55344 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms