Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA1P55317 AL022313.4-201ENST00000562756 2046 ntBASIC14.19□□□□□ -0.14
FOXA1P55317 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC14.18□□□□□ -0.14
FOXA1P55317 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.18□□□□□ -0.14
FOXA1P55317 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
FOXA1P55317 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 LINC02486-201ENST00000604157 3000 ntBASIC14.18□□□□□ -0.14
FOXA1P55317 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.18□□□□□ -0.14
FOXA1P55317 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC14.18□□□□□ -0.14
FOXA1P55317 AC072061.1-201ENST00000569710 2234 ntBASIC14.18□□□□□ -0.14
FOXA1P55317 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC14.18□□□□□ -0.14
FOXA1P55317 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
FOXA1P55317 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
FOXA1P55317 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.18□□□□□ -0.14
FOXA1P55317 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.18□□□□□ -0.14
FOXA1P55317 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.18□□□□□ -0.14
FOXA1P55317 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 AL590640.2-201ENST00000457038 527 ntBASIC14.18□□□□□ -0.14
FOXA1P55317 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.18□□□□□ -0.14
FOXA1P55317 AP001889.1-201ENST00000525414 633 ntBASIC14.18□□□□□ -0.14
FOXA1P55317 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
FOXA1P55317 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
FOXA1P55317 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
FOXA1P55317 MIR4745-201ENST00000577608 62 ntBASIC14.18□□□□□ -0.14
FOXA1P55317 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.18□□□□□ -0.14
FOXA1P55317 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.18□□□□□ -0.14
FOXA1P55317 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
FOXA1P55317 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
FOXA1P55317 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
FOXA1P55317 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
FOXA1P55317 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
FOXA1P55317 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
FOXA1P55317 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.18□□□□□ -0.14
FOXA1P55317 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
FOXA1P55317 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA1P55317 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
FOXA1P55317 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC14.17□□□□□ -0.14
FOXA1P55317 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 TUBB8P4-201ENST00000511806 1324 ntBASIC14.17□□□□□ -0.14
FOXA1P55317 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
FOXA1P55317 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.17□□□□□ -0.14
FOXA1P55317 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 AC015818.8-201ENST00000587907 1519 ntBASIC14.17□□□□□ -0.14
FOXA1P55317 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.17□□□□□ -0.14
FOXA1P55317 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.17□□□□□ -0.14
FOXA1P55317 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.17□□□□□ -0.14
FOXA1P55317 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
FOXA1P55317 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.17□□□□□ -0.14
FOXA1P55317 AC025279.2-201ENST00000569730 653 ntBASIC14.17□□□□□ -0.14
FOXA1P55317 MIR4683-201ENST00000579659 81 ntBASIC14.17□□□□□ -0.14
FOXA1P55317 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.17□□□□□ -0.14
FOXA1P55317 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.17□□□□□ -0.14
FOXA1P55317 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.17□□□□□ -0.14
FOXA1P55317 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.17□□□□□ -0.14
FOXA1P55317 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
FOXA1P55317 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.17□□□□□ -0.14
FOXA1P55317 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
FOXA1P55317 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
FOXA1P55317 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms