Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 AC104794.3-201ENST00000566840 1248 ntBASIC17.2■□□□□ 0.34
MRE11P49959 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC17.2■□□□□ 0.34
MRE11P49959 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.2■□□□□ 0.34
MRE11P49959 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.2■□□□□ 0.34
MRE11P49959 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.2■□□□□ 0.34
MRE11P49959 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
MRE11P49959 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
MRE11P49959 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
MRE11P49959 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.2■□□□□ 0.34
MRE11P49959 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC17.2■□□□□ 0.34
MRE11P49959 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC17.19■□□□□ 0.34
MRE11P49959 ABR-205ENST00000544583 5595 ntTSL 2 BASIC17.19■□□□□ 0.34
MRE11P49959 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.19■□□□□ 0.34
MRE11P49959 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
MRE11P49959 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
MRE11P49959 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
MRE11P49959 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
MRE11P49959 AL353779.1-201ENST00000434793 351 ntBASIC17.19■□□□□ 0.34
MRE11P49959 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 KRT223P-202ENST00000449164 1292 ntBASIC17.19■□□□□ 0.34
MRE11P49959 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.19■□□□□ 0.34
MRE11P49959 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.19■□□□□ 0.34
MRE11P49959 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.19■□□□□ 0.34
MRE11P49959 AP005482.1-201ENST00000563722 1273 ntBASIC17.19■□□□□ 0.34
MRE11P49959 CMC2-214ENST00000565925 640 ntTSL 5 BASIC17.19■□□□□ 0.34
MRE11P49959 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.19■□□□□ 0.34
MRE11P49959 AL590560.3-201ENST00000623350 461 ntBASIC17.19■□□□□ 0.34
MRE11P49959 COX11-210ENST00000639671 696 ntBASIC17.19■□□□□ 0.34
MRE11P49959 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
MRE11P49959 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 AC100757.3-201ENST00000622361 1406 ntBASIC17.19■□□□□ 0.34
MRE11P49959 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC17.19■□□□□ 0.34
MRE11P49959 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.19■□□□□ 0.34
MRE11P49959 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.19■□□□□ 0.34
MRE11P49959 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MRE11P49959 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 AC073869.1-201ENST00000415574 2762 ntBASIC17.18■□□□□ 0.34
MRE11P49959 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC17.18■□□□□ 0.34
MRE11P49959 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC17.18■□□□□ 0.34
MRE11P49959 AC090643.2-201ENST00000623442 2029 ntBASIC17.18■□□□□ 0.34
MRE11P49959 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.18■□□□□ 0.34
MRE11P49959 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
MRE11P49959 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MRE11P49959 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC17.18■□□□□ 0.34
MRE11P49959 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC17.18■□□□□ 0.34
MRE11P49959 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
MRE11P49959 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
MRE11P49959 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
MRE11P49959 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.18■□□□□ 0.34
MRE11P49959 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.18■□□□□ 0.34
MRE11P49959 AL139010.1-201ENST00000454878 894 ntBASIC17.18■□□□□ 0.34
MRE11P49959 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 AC027369.6-201ENST00000525520 931 ntBASIC17.18■□□□□ 0.34
MRE11P49959 API5-211ENST00000534695 560 ntTSL 5 BASIC17.18■□□□□ 0.34
MRE11P49959 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.18■□□□□ 0.34
MRE11P49959 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
MRE11P49959 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.18■□□□□ 0.34
MRE11P49959 AC133552.6-201ENST00000613406 534 ntBASIC17.18■□□□□ 0.34
MRE11P49959 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.18■□□□□ 0.34
MRE11P49959 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC17.18■□□□□ 0.34
MRE11P49959 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
MRE11P49959 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
MRE11P49959 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
MRE11P49959 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MRE11P49959 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC17.18■□□□□ 0.34
MRE11P49959 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
MRE11P49959 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms