Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PTPN9P43378 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC15.17■□□□□ 0.02
PTPN9P43378 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
PTPN9P43378 LINC01230-201ENST00000625222 3017 ntBASIC15.17■□□□□ 0.02
PTPN9P43378 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC15.17■□□□□ 0.02
PTPN9P43378 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
PTPN9P43378 AC144522.1-201ENST00000625111 1658 ntBASIC15.17■□□□□ 0.02
PTPN9P43378 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PTPN9P43378 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 KRT8P29-201ENST00000420409 1371 ntBASIC15.17■□□□□ 0.02
PTPN9P43378 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
PTPN9P43378 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN9P43378 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
PTPN9P43378 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN9P43378 AC006122.1-201ENST00000493323 440 ntBASIC15.17■□□□□ 0.02
PTPN9P43378 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.17■□□□□ 0.02
PTPN9P43378 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.17■□□□□ 0.02
PTPN9P43378 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.17■□□□□ 0.02
PTPN9P43378 RIT1-205ENST00000539040 919 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN9P43378 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC15.17■□□□□ 0.02
PTPN9P43378 AP000346.4-201ENST00000614827 381 ntBASIC15.17■□□□□ 0.02
PTPN9P43378 AL023803.2-201ENST00000620080 638 ntBASIC15.17■□□□□ 0.02
PTPN9P43378 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PTPN9P43378 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN9P43378 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
PTPN9P43378 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
PTPN9P43378 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.17■□□□□ 0.02
PTPN9P43378 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.17■□□□□ 0.02
PTPN9P43378 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PTPN9P43378 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
PTPN9P43378 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.16■□□□□ 0.02
PTPN9P43378 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
PTPN9P43378 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN9P43378 MIR600HG-201ENST00000449175 5984 ntBASIC15.16■□□□□ 0.02
PTPN9P43378 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
PTPN9P43378 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN9P43378 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN9P43378 POM121L10P-201ENST00000436994 1285 ntBASIC15.16■□□□□ 0.02
PTPN9P43378 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC15.16■□□□□ 0.02
PTPN9P43378 AL591846.1-201ENST00000451736 433 ntBASIC15.16■□□□□ 0.02
PTPN9P43378 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.16■□□□□ 0.02
PTPN9P43378 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN9P43378 AC133540.1-201ENST00000620845 1019 ntBASIC15.16■□□□□ 0.02
PTPN9P43378 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN9P43378 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN9P43378 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
PTPN9P43378 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN9P43378 CICP16-201ENST00000502609 2813 ntBASIC15.16■□□□□ 0.02
PTPN9P43378 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
PTPN9P43378 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
PTPN9P43378 CYP4F23P-201ENST00000593402 1579 ntBASIC15.15■□□□□ 0.02
PTPN9P43378 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN9P43378 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
PTPN9P43378 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN9P43378 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PTPN9P43378 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms