Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC16.39■□□□□ 0.21
CIITAP33076 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC16.39■□□□□ 0.21
CIITAP33076 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC16.39■□□□□ 0.21
CIITAP33076 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC16.39■□□□□ 0.21
CIITAP33076 MIR3619-201ENST00000579667 83 ntBASIC16.39■□□□□ 0.21
CIITAP33076 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC16.39■□□□□ 0.21
CIITAP33076 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CIITAP33076 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CIITAP33076 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CIITAP33076 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CIITAP33076 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.39■□□□□ 0.21
CIITAP33076 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC16.39■□□□□ 0.21
CIITAP33076 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.39■□□□□ 0.21
CIITAP33076 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
CIITAP33076 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
CIITAP33076 AC007686.3-201ENST00000619017 3487 ntBASIC16.39■□□□□ 0.21
CIITAP33076 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.39■□□□□ 0.21
CIITAP33076 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 AP002353.1-201ENST00000528257 1599 ntBASIC16.38■□□□□ 0.21
CIITAP33076 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
CIITAP33076 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.38■□□□□ 0.21
CIITAP33076 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CIITAP33076 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC16.38■□□□□ 0.21
CIITAP33076 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.38■□□□□ 0.21
CIITAP33076 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC16.38■□□□□ 0.21
CIITAP33076 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.38■□□□□ 0.21
CIITAP33076 TSPY25P-201ENST00000429463 745 ntBASIC16.38■□□□□ 0.21
CIITAP33076 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC16.38■□□□□ 0.21
CIITAP33076 AC092580.1-201ENST00000433998 658 ntBASIC16.38■□□□□ 0.21
CIITAP33076 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC16.38■□□□□ 0.21
CIITAP33076 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
CIITAP33076 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
CIITAP33076 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC16.38■□□□□ 0.21
CIITAP33076 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.38■□□□□ 0.21
CIITAP33076 NAP1L6-202ENST00000641404 1222 ntBASIC16.38■□□□□ 0.21
CIITAP33076 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CIITAP33076 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC16.38■□□□□ 0.21
CIITAP33076 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CIITAP33076 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.38■□□□□ 0.21
CIITAP33076 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
CIITAP33076 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CIITAP33076 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC16.38■□□□□ 0.21
CIITAP33076 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CIITAP33076 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CIITAP33076 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CIITAP33076 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CIITAP33076 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.37■□□□□ 0.21
CIITAP33076 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.37■□□□□ 0.21
CIITAP33076 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CIITAP33076 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CIITAP33076 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CIITAP33076 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
CIITAP33076 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.37■□□□□ 0.21
CIITAP33076 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CIITAP33076 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CIITAP33076 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC16.37■□□□□ 0.21
CIITAP33076 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CIITAP33076 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CIITAP33076 AC007191.1-201ENST00000623179 2995 ntBASIC16.37■□□□□ 0.21
CIITAP33076 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CIITAP33076 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.37■□□□□ 0.21
CIITAP33076 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC16.37■□□□□ 0.21
CIITAP33076 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CIITAP33076 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CIITAP33076 AC239868.1-201ENST00000369385 493 ntBASIC16.37■□□□□ 0.21
CIITAP33076 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CIITAP33076 MIR769-201ENST00000390225 118 ntBASIC16.37■□□□□ 0.21
CIITAP33076 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.37■□□□□ 0.21
CIITAP33076 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC16.37■□□□□ 0.21
CIITAP33076 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC16.37■□□□□ 0.21
CIITAP33076 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CIITAP33076 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.37■□□□□ 0.21
CIITAP33076 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CIITAP33076 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC16.37■□□□□ 0.21
CIITAP33076 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC16.37■□□□□ 0.21
CIITAP33076 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
CIITAP33076 AL161670.2-201ENST00000557650 1227 ntBASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms