Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC13.67□□□□□ -0.22
COL5A1P20908 AC091769.1-201ENST00000619576 568 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.67□□□□□ -0.22
COL5A1P20908 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
COL5A1P20908 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 BX640514.1-201ENST00000583223 1918 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC13.67□□□□□ -0.22
COL5A1P20908 LINC00552-201ENST00000625151 2579 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 PDXDC2P-206ENST00000534700 1315 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC13.67□□□□□ -0.22
COL5A1P20908 PTGER4P2-201ENST00000328411 252 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC13.67□□□□□ -0.22
COL5A1P20908 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC13.67□□□□□ -0.22
COL5A1P20908 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 AL929302.1-201ENST00000426556 871 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 AL512599.1-201ENST00000430724 685 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL5A1P20908 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC13.67□□□□□ -0.22
COL5A1P20908 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 PTGER4P3-201ENST00000458150 252 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC13.67□□□□□ -0.22
COL5A1P20908 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC13.67□□□□□ -0.22
COL5A1P20908 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC13.67□□□□□ -0.22
COL5A1P20908 ABHD17AP9-201ENST00000561925 548 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 RN7SL556P-201ENST00000582856 298 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 AL139339.2-201ENST00000608063 657 ntBASIC13.67□□□□□ -0.22
COL5A1P20908 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
COL5A1P20908 KRT8P18-201ENST00000413425 1445 ntBASIC13.66□□□□□ -0.22
COL5A1P20908 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC13.66□□□□□ -0.22
COL5A1P20908 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.66□□□□□ -0.22
COL5A1P20908 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
COL5A1P20908 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
COL5A1P20908 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
COL5A1P20908 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.66□□□□□ -0.22
COL5A1P20908 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
COL5A1P20908 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
COL5A1P20908 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC13.66□□□□□ -0.22
COL5A1P20908 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC13.66□□□□□ -0.22
COL5A1P20908 NME6-208ENST00000435684 599 ntTSL 2 BASIC13.66□□□□□ -0.22
COL5A1P20908 STK24P1-201ENST00000455035 1291 ntBASIC13.66□□□□□ -0.22
COL5A1P20908 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC13.66□□□□□ -0.22
COL5A1P20908 AC063952.3-201ENST00000467756 308 ntBASIC13.66□□□□□ -0.22
COL5A1P20908 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC13.66□□□□□ -0.22
COL5A1P20908 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC13.66□□□□□ -0.22
COL5A1P20908 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC13.66□□□□□ -0.22
COL5A1P20908 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.66□□□□□ -0.22
COL5A1P20908 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL5A1P20908 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
COL5A1P20908 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.65□□□□□ -0.22
COL5A1P20908 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC13.65□□□□□ -0.22
COL5A1P20908 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC13.65□□□□□ -0.22
COL5A1P20908 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL5A1P20908 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC13.65□□□□□ -0.22
COL5A1P20908 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
COL5A1P20908 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC13.65□□□□□ -0.22
COL5A1P20908 PRSS3P1-201ENST00000503996 742 ntBASIC13.65□□□□□ -0.22
COL5A1P20908 KRT18P37-201ENST00000520711 1282 ntBASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms