Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC16.19■□□□□ 0.18
COL11A1P12107 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC16.19■□□□□ 0.18
COL11A1P12107 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC16.19■□□□□ 0.18
COL11A1P12107 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.19■□□□□ 0.18
COL11A1P12107 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.19■□□□□ 0.18
COL11A1P12107 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
COL11A1P12107 ODCP-201ENST00000459650 1639 ntBASIC16.19■□□□□ 0.18
COL11A1P12107 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC16.19■□□□□ 0.18
COL11A1P12107 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
COL11A1P12107 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.19■□□□□ 0.18
COL11A1P12107 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC16.19■□□□□ 0.18
COL11A1P12107 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.19■□□□□ 0.18
COL11A1P12107 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
COL11A1P12107 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
COL11A1P12107 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 AL390755.1-201ENST00000623716 2027 ntBASIC16.19■□□□□ 0.18
COL11A1P12107 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 MIR1227-201ENST00000408484 88 ntBASIC16.19■□□□□ 0.18
COL11A1P12107 HMGA1P1-201ENST00000415560 1062 ntBASIC16.19■□□□□ 0.18
COL11A1P12107 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC16.19■□□□□ 0.18
COL11A1P12107 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 AC025186.1-201ENST00000478174 870 ntBASIC16.19■□□□□ 0.18
COL11A1P12107 RN7SL767P-201ENST00000493013 295 ntBASIC16.19■□□□□ 0.18
COL11A1P12107 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC16.19■□□□□ 0.18
COL11A1P12107 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
COL11A1P12107 RPS5-204ENST00000598098 536 ntTSL 2 BASIC16.19■□□□□ 0.18
COL11A1P12107 AC091769.1-201ENST00000619576 568 ntBASIC16.19■□□□□ 0.18
COL11A1P12107 AC138466.4-201ENST00000623965 852 ntBASIC16.19■□□□□ 0.18
COL11A1P12107 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC16.19■□□□□ 0.18
COL11A1P12107 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL11A1P12107 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
COL11A1P12107 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
COL11A1P12107 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC16.18■□□□□ 0.18
COL11A1P12107 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
COL11A1P12107 BCL2-203ENST00000589955 5011 ntBASIC16.18■□□□□ 0.18
COL11A1P12107 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
COL11A1P12107 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC16.18■□□□□ 0.18
COL11A1P12107 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC16.18■□□□□ 0.18
COL11A1P12107 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC16.18■□□□□ 0.18
COL11A1P12107 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC16.18■□□□□ 0.18
COL11A1P12107 RARS-210ENST00000626454 177 ntTSL 5 BASIC16.18■□□□□ 0.18
COL11A1P12107 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC16.18■□□□□ 0.18
COL11A1P12107 AL365181.1-201ENST00000564032 1828 ntBASIC16.18■□□□□ 0.18
COL11A1P12107 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC16.18■□□□□ 0.18
COL11A1P12107 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
COL11A1P12107 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
COL11A1P12107 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.18■□□□□ 0.18
COL11A1P12107 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL11A1P12107 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL11A1P12107 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.17■□□□□ 0.18
COL11A1P12107 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL11A1P12107 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL11A1P12107 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
COL11A1P12107 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
COL11A1P12107 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC16.17■□□□□ 0.18
COL11A1P12107 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC16.17■□□□□ 0.18
COL11A1P12107 RN7SL23P-201ENST00000484055 275 ntBASIC16.17■□□□□ 0.18
COL11A1P12107 ALG1L3P-201ENST00000503331 765 ntBASIC16.17■□□□□ 0.18
COL11A1P12107 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC16.17■□□□□ 0.18
COL11A1P12107 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC16.17■□□□□ 0.18
COL11A1P12107 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC16.17■□□□□ 0.18
COL11A1P12107 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL11A1P12107 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC16.17■□□□□ 0.18
COL11A1P12107 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
COL11A1P12107 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.17■□□□□ 0.18
COL11A1P12107 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL11A1P12107 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.17■□□□□ 0.18
COL11A1P12107 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL11A1P12107 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC16.17■□□□□ 0.18
COL11A1P12107 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
COL11A1P12107 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL11A1P12107 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms