Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 UROS-201ENST00000368774 744 ntTSL 2 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 MTHFR-210ENST00000641407 2387 ntBASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 NME4-203ENST00000397722 1232 ntTSL 2 BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
SHROOM4Q9ULL8 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 TPO-203ENST00000346956 2923 ntTSL 5 BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 SURF4-203ENST00000371991 715 ntTSL 3 BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 RBM4-207ENST00000506523 654 ntTSL 3 BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 AC006548.2-201ENST00000605217 529 ntBASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
SHROOM4Q9ULL8 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 RN7SL23P-201ENST00000484055 275 ntBASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC27.41■■□□□ 1.98
SHROOM4Q9ULL8 DBET-201ENST00000630918 3363 ntBASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 POR-201ENST00000394893 2532 ntTSL 5 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 ERP29P1-201ENST00000442902 706 ntBASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 RHEB-207ENST00000496004 744 ntTSL 2 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC27.4■■□□□ 1.98
SHROOM4Q9ULL8 AC006483.2-201ENST00000609813 515 ntBASIC27.4■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms