Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC12.45□□□□□ -0.42
COL12A1Q99715 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC12.45□□□□□ -0.42
COL12A1Q99715 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC12.45□□□□□ -0.42
COL12A1Q99715 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC12.45□□□□□ -0.42
COL12A1Q99715 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 AC018529.2-202ENST00000611482 3087 ntBASIC12.45□□□□□ -0.42
COL12A1Q99715 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
COL12A1Q99715 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 CRIP1P2-201ENST00000425396 228 ntBASIC12.45□□□□□ -0.42
COL12A1Q99715 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 AL136084.1-201ENST00000449172 318 ntBASIC12.45□□□□□ -0.42
COL12A1Q99715 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC12.45□□□□□ -0.42
COL12A1Q99715 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC12.45□□□□□ -0.42
COL12A1Q99715 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
COL12A1Q99715 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC12.45□□□□□ -0.42
COL12A1Q99715 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC12.45□□□□□ -0.42
COL12A1Q99715 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC12.44□□□□□ -0.42
COL12A1Q99715 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC12.44□□□□□ -0.42
COL12A1Q99715 FAM226B-201ENST00000602508 1490 ntBASIC12.44□□□□□ -0.42
COL12A1Q99715 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
COL12A1Q99715 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 MIR611-201ENST00000384869 67 ntBASIC12.44□□□□□ -0.42
COL12A1Q99715 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
COL12A1Q99715 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
COL12A1Q99715 U73169.1-201ENST00000395152 367 ntBASIC12.44□□□□□ -0.42
COL12A1Q99715 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC12.44□□□□□ -0.42
COL12A1Q99715 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC12.44□□□□□ -0.42
COL12A1Q99715 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC12.44□□□□□ -0.42
COL12A1Q99715 AC133141.1-201ENST00000443015 339 ntBASIC12.44□□□□□ -0.42
COL12A1Q99715 AC099328.1-201ENST00000498809 1030 ntBASIC12.44□□□□□ -0.42
COL12A1Q99715 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC12.44□□□□□ -0.42
COL12A1Q99715 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC12.44□□□□□ -0.42
COL12A1Q99715 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC12.44□□□□□ -0.42
COL12A1Q99715 AC018695.2-201ENST00000602789 498 ntTSL 5 BASIC12.44□□□□□ -0.42
COL12A1Q99715 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC12.44□□□□□ -0.42
COL12A1Q99715 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
COL12A1Q99715 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
COL12A1Q99715 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC12.44□□□□□ -0.42
COL12A1Q99715 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC12.44□□□□□ -0.42
COL12A1Q99715 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC12.44□□□□□ -0.42
COL12A1Q99715 OR7E115P-201ENST00000382617 1024 ntBASIC12.44□□□□□ -0.42
COL12A1Q99715 RPSAP12-201ENST00000435879 888 ntBASIC12.44□□□□□ -0.42
COL12A1Q99715 HNRNPA1P10-201ENST00000444945 962 ntBASIC12.44□□□□□ -0.42
COL12A1Q99715 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
COL12A1Q99715 EEF1GP8-201ENST00000506566 1154 ntBASIC12.44□□□□□ -0.42
COL12A1Q99715 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC12.44□□□□□ -0.42
COL12A1Q99715 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC12.44□□□□□ -0.42
COL12A1Q99715 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC12.44□□□□□ -0.42
COL12A1Q99715 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
COL12A1Q99715 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC12.44□□□□□ -0.42
COL12A1Q99715 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.44□□□□□ -0.42
COL12A1Q99715 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.44□□□□□ -0.42
COL12A1Q99715 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC12.44□□□□□ -0.42
COL12A1Q99715 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL12A1Q99715 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.44□□□□□ -0.42
COL12A1Q99715 MIR181D-201ENST00000384853 137 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 AC000077.1-201ENST00000420012 953 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 AC005722.1-201ENST00000431878 964 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 AC004771.1-201ENST00000438266 583 ntTSL 2 BASIC12.43□□□□□ -0.42
COL12A1Q99715 RNU1-80P-201ENST00000459500 161 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 AC008021.1-201ENST00000474180 414 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 HNRNPA1P72-201ENST00000529511 967 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 KRT127P-201ENST00000547183 433 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms