Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.29□□□□□ -0.12
PKP4Q99569 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.29□□□□□ -0.12
PKP4Q99569 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
PKP4Q99569 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.29□□□□□ -0.12
PKP4Q99569 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
PKP4Q99569 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.29□□□□□ -0.12
PKP4Q99569 AC079178.1-201ENST00000420915 656 ntBASIC14.29□□□□□ -0.12
PKP4Q99569 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.29□□□□□ -0.12
PKP4Q99569 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.29□□□□□ -0.12
PKP4Q99569 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 DUX4L46-201ENST00000566845 751 ntBASIC14.29□□□□□ -0.12
PKP4Q99569 EEF1DP1-201ENST00000585891 896 ntBASIC14.29□□□□□ -0.12
PKP4Q99569 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
PKP4Q99569 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC14.29□□□□□ -0.12
PKP4Q99569 AC244157.2-201ENST00000616239 1006 ntBASIC14.29□□□□□ -0.12
PKP4Q99569 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.29□□□□□ -0.12
PKP4Q99569 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC14.29□□□□□ -0.12
PKP4Q99569 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.29□□□□□ -0.12
PKP4Q99569 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.29□□□□□ -0.12
PKP4Q99569 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PKP4Q99569 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
PKP4Q99569 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
PKP4Q99569 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.28□□□□□ -0.12
PKP4Q99569 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.28□□□□□ -0.12
PKP4Q99569 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
PKP4Q99569 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.28□□□□□ -0.12
PKP4Q99569 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 AC090505.1-201ENST00000430515 1834 ntBASIC14.28□□□□□ -0.12
PKP4Q99569 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.28□□□□□ -0.12
PKP4Q99569 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.28□□□□□ -0.12
PKP4Q99569 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC14.28□□□□□ -0.12
PKP4Q99569 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.28□□□□□ -0.12
PKP4Q99569 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.28□□□□□ -0.12
PKP4Q99569 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.28□□□□□ -0.12
PKP4Q99569 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.28□□□□□ -0.12
PKP4Q99569 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.28□□□□□ -0.12
PKP4Q99569 RNA5SP412-201ENST00000516234 123 ntBASIC14.28□□□□□ -0.12
PKP4Q99569 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.28□□□□□ -0.12
PKP4Q99569 SORD2P-201ENST00000558556 1069 ntBASIC14.28□□□□□ -0.12
PKP4Q99569 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC14.28□□□□□ -0.12
PKP4Q99569 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.28□□□□□ -0.12
PKP4Q99569 MIR4783-201ENST00000580343 82 ntBASIC14.28□□□□□ -0.12
PKP4Q99569 MIR6074-201ENST00000612054 107 ntBASIC14.28□□□□□ -0.12
PKP4Q99569 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
PKP4Q99569 AC011498.7-201ENST00000624986 2027 ntBASIC14.28□□□□□ -0.12
PKP4Q99569 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.28□□□□□ -0.12
PKP4Q99569 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
PKP4Q99569 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PKP4Q99569 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.28□□□□□ -0.12
PKP4Q99569 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PKP4Q99569 AC012617.1-204ENST00000586340 2305 ntBASIC14.27□□□□□ -0.12
PKP4Q99569 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PKP4Q99569 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PKP4Q99569 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.12
PKP4Q99569 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PKP4Q99569 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
PKP4Q99569 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms