Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 AL109954.1-202ENST00000564051 2148 ntBASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 PTPA-218ENST00000435132 618 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 KRT8P13-201ENST00000463294 1010 ntBASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 AC004466.1-201ENST00000599515 1080 ntBASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 AC073413.1-201ENST00000603927 732 ntBASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 FKBP4P6-201ENST00000457486 1332 ntBASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.29□□□□□ -0.12
CLIP3Q96DZ5 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 KRTAP10-13P-201ENST00000412914 571 ntBASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 BCYRN1-201ENST00000418539 200 ntBASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 ARTN-209ENST00000479128 471 ntTSL 3 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 NCK2-206ENST00000522586 490 ntTSL 5 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CLIP3Q96DZ5 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms