Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 SALL4P5-201ENST00000419001 1760 ntBASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 HIST2H2BB-201ENST00000449108 381 ntBASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 C2orf69P2-201ENST00000562032 1123 ntBASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 DERL2-202ENST00000570848 657 ntTSL 5 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 RN7SL713P-201ENST00000582127 302 ntBASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 AC244093.1-201ENST00000610837 814 ntBASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.55■□□□□ 0.4
CHMP4CQ96CF2 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 AC026748.1-201ENST00000624349 3251 ntBASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CHMP4CQ96CF2 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 AC018735.1-201ENST00000437208 1502 ntBASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 AC092053.3-201ENST00000641308 4975 ntBASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms