Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TTC28Q96AY4 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
TTC28Q96AY4 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 MIR632-201ENST00000385193 94 ntBASIC14.41□□□□□ -0.1
TTC28Q96AY4 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 RN7SL794P-201ENST00000469816 280 ntBASIC14.41□□□□□ -0.1
TTC28Q96AY4 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 AC092634.5-206ENST00000593670 812 ntTSL 5 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 MIR6871-201ENST00000613433 56 ntBASIC14.41□□□□□ -0.1
TTC28Q96AY4 MIR7848-201ENST00000617402 101 ntBASIC14.41□□□□□ -0.1
TTC28Q96AY4 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 TP73-207ENST00000378290 1831 ntTSL 2 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 PHBP3-201ENST00000412562 819 ntBASIC14.41□□□□□ -0.1
TTC28Q96AY4 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 GAPDHP65-201ENST00000425487 1006 ntBASIC14.41□□□□□ -0.1
TTC28Q96AY4 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 AC109830.1-203ENST00000506638 467 ntTSL 2 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 AC093300.1-201ENST00000510368 1201 ntBASIC14.41□□□□□ -0.1
TTC28Q96AY4 PRDX2P3-201ENST00000515779 586 ntBASIC14.41□□□□□ -0.1
TTC28Q96AY4 AP003170.2-201ENST00000544730 786 ntBASIC14.41□□□□□ -0.1
TTC28Q96AY4 GOLGA2P10-201ENST00000550961 817 ntBASIC14.41□□□□□ -0.1
TTC28Q96AY4 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 OSGIN1-206ENST00000565123 833 ntTSL 2 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 AC015818.3-201ENST00000583797 589 ntBASIC14.41□□□□□ -0.1
TTC28Q96AY4 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 FLJ38576-201ENST00000623820 2459 ntBASIC14.41□□□□□ -0.1
TTC28Q96AY4 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TTC28Q96AY4 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.41□□□□□ -0.1
TTC28Q96AY4 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 AL031577.1-201ENST00000339867 399 ntBASIC14.4□□□□□ -0.1
TTC28Q96AY4 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 AC139143.1-201ENST00000441772 1207 ntBASIC14.4□□□□□ -0.1
TTC28Q96AY4 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 TRPM1-210ENST00000559179 1002 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 HPX-213ENST00000615166 826 ntTSL 5 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 HSD3BP1-201ENST00000286193 1111 ntBASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms