Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA4P78363 EML1-203ENST00000334192 4064 ntTSL 5 BASIC12.62□□□□□ -0.39
ABCA4P78363 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.62□□□□□ -0.39
ABCA4P78363 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC12.62□□□□□ -0.39
ABCA4P78363 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA4P78363 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA4P78363 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA4P78363 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA4P78363 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA4P78363 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC12.62□□□□□ -0.39
ABCA4P78363 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
ABCA4P78363 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
ABCA4P78363 KRT8P31-201ENST00000504812 1408 ntBASIC12.62□□□□□ -0.39
ABCA4P78363 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC12.62□□□□□ -0.39
ABCA4P78363 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
ABCA4P78363 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA4P78363 BUD31-205ENST00000456893 512 ntTSL 5 BASIC12.62□□□□□ -0.39
ABCA4P78363 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA4P78363 RN7SL258P-201ENST00000478664 300 ntBASIC12.62□□□□□ -0.39
ABCA4P78363 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
ABCA4P78363 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
ABCA4P78363 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA4P78363 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC12.62□□□□□ -0.39
ABCA4P78363 ETV2-207ENST00000619399 994 ntTSL 5 BASIC12.62□□□□□ -0.39
ABCA4P78363 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA4P78363 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC12.62□□□□□ -0.39
ABCA4P78363 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
ABCA4P78363 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC12.61□□□□□ -0.39
ABCA4P78363 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 AC023024.2-201ENST00000623561 1993 ntBASIC12.61□□□□□ -0.39
ABCA4P78363 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 HLA-DQB2-231ENST00000435145 2026 ntBASIC12.61□□□□□ -0.39
ABCA4P78363 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
ABCA4P78363 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.61□□□□□ -0.39
ABCA4P78363 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.61□□□□□ -0.39
ABCA4P78363 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 XBP1P1-201ENST00000436573 652 ntBASIC12.61□□□□□ -0.39
ABCA4P78363 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC12.61□□□□□ -0.39
ABCA4P78363 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC12.61□□□□□ -0.39
ABCA4P78363 FTH1P22-201ENST00000456305 520 ntBASIC12.61□□□□□ -0.39
ABCA4P78363 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC12.61□□□□□ -0.39
ABCA4P78363 AL109837.1-201ENST00000603272 613 ntBASIC12.61□□□□□ -0.39
ABCA4P78363 RNF146-211ENST00000609447 607 ntTSL 4 BASIC12.61□□□□□ -0.39
ABCA4P78363 AL161773.1-201ENST00000624845 863 ntBASIC12.61□□□□□ -0.39
ABCA4P78363 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
ABCA4P78363 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
ABCA4P78363 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 AC131212.3-201ENST00000624087 4219 ntBASIC12.61□□□□□ -0.39
ABCA4P78363 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
ABCA4P78363 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC12.61□□□□□ -0.39
ABCA4P78363 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC12.61□□□□□ -0.39
ABCA4P78363 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ABCA4P78363 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA4P78363 TMBIM7P-202ENST00000641474 1516 ntBASIC12.6□□□□□ -0.39
ABCA4P78363 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA4P78363 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC12.6□□□□□ -0.39
ABCA4P78363 AC012362.1-201ENST00000434906 739 ntBASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms