Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC13.89□□□□□ -0.19
SOX3P41225 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.89□□□□□ -0.19
SOX3P41225 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SOX3P41225 CLUHP2-201ENST00000426660 1303 ntBASIC13.89□□□□□ -0.19
SOX3P41225 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.89□□□□□ -0.19
SOX3P41225 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.88□□□□□ -0.19
SOX3P41225 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.88□□□□□ -0.19
SOX3P41225 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.88□□□□□ -0.19
SOX3P41225 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
SOX3P41225 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX3P41225 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.88□□□□□ -0.19
SOX3P41225 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.88□□□□□ -0.19
SOX3P41225 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
SOX3P41225 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.88□□□□□ -0.19
SOX3P41225 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX3P41225 AL355994.2-201ENST00000447882 704 ntBASIC13.88□□□□□ -0.19
SOX3P41225 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX3P41225 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC13.88□□□□□ -0.19
SOX3P41225 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.88□□□□□ -0.19
SOX3P41225 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX3P41225 MIR4741-201ENST00000579822 90 ntBASIC13.88□□□□□ -0.19
SOX3P41225 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.88□□□□□ -0.19
SOX3P41225 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SOX3P41225 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 AC138466.3-201ENST00000619983 221 ntBASIC13.88□□□□□ -0.19
SOX3P41225 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.88□□□□□ -0.19
SOX3P41225 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.88□□□□□ -0.19
SOX3P41225 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SOX3P41225 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC13.88□□□□□ -0.19
SOX3P41225 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC13.88□□□□□ -0.19
SOX3P41225 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX3P41225 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC13.88□□□□□ -0.19
SOX3P41225 TUBB1P2-201ENST00000422712 1306 ntBASIC13.88□□□□□ -0.19
SOX3P41225 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX3P41225 TUBB1P1-201ENST00000503144 1300 ntBASIC13.88□□□□□ -0.19
SOX3P41225 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SOX3P41225 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
SOX3P41225 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC13.88□□□□□ -0.19
SOX3P41225 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.87□□□□□ -0.19
SOX3P41225 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SOX3P41225 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC13.87□□□□□ -0.19
SOX3P41225 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.87□□□□□ -0.19
SOX3P41225 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.87□□□□□ -0.19
SOX3P41225 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
SOX3P41225 AC152010.1-201ENST00000415779 2006 ntBASIC13.87□□□□□ -0.19
SOX3P41225 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SOX3P41225 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.87□□□□□ -0.19
SOX3P41225 AC092658.1-201ENST00000505836 891 ntBASIC13.87□□□□□ -0.19
SOX3P41225 COX5BP1-201ENST00000507622 393 ntBASIC13.87□□□□□ -0.19
SOX3P41225 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.87□□□□□ -0.19
SOX3P41225 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.87□□□□□ -0.19
SOX3P41225 RN7SL560P-201ENST00000577943 264 ntBASIC13.87□□□□□ -0.19
SOX3P41225 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
SOX3P41225 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.87□□□□□ -0.19
SOX3P41225 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13.87□□□□□ -0.19
SOX3P41225 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.87□□□□□ -0.19
SOX3P41225 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms