Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.8■□□□□ 0.44
COL5A3P25940 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A3P25940 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A3P25940 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
COL5A3P25940 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC17.79■□□□□ 0.44
COL5A3P25940 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A3P25940 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.79■□□□□ 0.44
COL5A3P25940 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
COL5A3P25940 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC17.79■□□□□ 0.44
COL5A3P25940 AC005722.1-201ENST00000431878 964 ntBASIC17.79■□□□□ 0.44
COL5A3P25940 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A3P25940 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A3P25940 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC17.79■□□□□ 0.44
COL5A3P25940 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC17.79■□□□□ 0.44
COL5A3P25940 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC17.79■□□□□ 0.44
COL5A3P25940 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC17.79■□□□□ 0.44
COL5A3P25940 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC17.79■□□□□ 0.44
COL5A3P25940 AC026120.2-201ENST00000617239 309 ntBASIC17.79■□□□□ 0.44
COL5A3P25940 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A3P25940 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL5A3P25940 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL5A3P25940 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL5A3P25940 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL5A3P25940 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL5A3P25940 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL5A3P25940 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL5A3P25940 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A3P25940 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A3P25940 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.79■□□□□ 0.44
COL5A3P25940 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
COL5A3P25940 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A3P25940 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A3P25940 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC17.79■□□□□ 0.44
COL5A3P25940 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A3P25940 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL5A3P25940 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL5A3P25940 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL5A3P25940 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC17.78■□□□□ 0.44
COL5A3P25940 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC17.78■□□□□ 0.44
COL5A3P25940 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A3P25940 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC17.78■□□□□ 0.44
COL5A3P25940 AC139713.2-207ENST00000641556 1292 ntBASIC17.78■□□□□ 0.44
COL5A3P25940 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
COL5A3P25940 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A3P25940 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC17.78■□□□□ 0.44
COL5A3P25940 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC17.78■□□□□ 0.44
COL5A3P25940 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A3P25940 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A3P25940 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A3P25940 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC17.78■□□□□ 0.44
COL5A3P25940 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A3P25940 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A3P25940 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
COL5A3P25940 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC17.78■□□□□ 0.44
COL5A3P25940 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC17.78■□□□□ 0.44
COL5A3P25940 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A3P25940 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC17.78■□□□□ 0.44
COL5A3P25940 AC004686.1-201ENST00000605113 538 ntBASIC17.78■□□□□ 0.44
COL5A3P25940 AC113385.2-201ENST00000614465 762 ntBASIC17.78■□□□□ 0.44
COL5A3P25940 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A3P25940 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A3P25940 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.78■□□□□ 0.44
COL5A3P25940 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL5A3P25940 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL5A3P25940 TUBB8P4-201ENST00000511806 1324 ntBASIC17.77■□□□□ 0.44
COL5A3P25940 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC17.77■□□□□ 0.44
COL5A3P25940 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL5A3P25940 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.77■□□□□ 0.44
COL5A3P25940 AC105917.1-201ENST00000506637 2539 ntBASIC17.77■□□□□ 0.44
COL5A3P25940 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL5A3P25940 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL5A3P25940 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL5A3P25940 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL5A3P25940 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL5A3P25940 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC17.77■□□□□ 0.44
COL5A3P25940 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC17.77■□□□□ 0.44
COL5A3P25940 TBC1D3P6-201ENST00000505954 962 ntBASIC17.77■□□□□ 0.44
COL5A3P25940 AC113347.2-201ENST00000512350 279 ntBASIC17.77■□□□□ 0.44
COL5A3P25940 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL5A3P25940 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL5A3P25940 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL5A3P25940 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
COL5A3P25940 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
COL5A3P25940 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.77■□□□□ 0.43
COL5A3P25940 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL5A3P25940 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.43
COL5A3P25940 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL5A3P25940 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A3P25940 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.76■□□□□ 0.43
COL5A3P25940 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.76■□□□□ 0.43
COL5A3P25940 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A3P25940 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
COL5A3P25940 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
COL5A3P25940 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A3P25940 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A3P25940 DKKL1P1-201ENST00000400550 698 ntBASIC17.76■□□□□ 0.43
COL5A3P25940 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A3P25940 BRI3P1-201ENST00000440440 378 ntBASIC17.76■□□□□ 0.43
COL5A3P25940 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC17.76■□□□□ 0.43
COL5A3P25940 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms