Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
BDNFP23560 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.44■□□□□ 0.06
BDNFP23560 AGGF1P1-201ENST00000509500 2073 ntBASIC15.44■□□□□ 0.06
BDNFP23560 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.43■□□□□ 0.06
BDNFP23560 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
BDNFP23560 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.43■□□□□ 0.06
BDNFP23560 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 MIR600HG-201ENST00000449175 5984 ntBASIC15.43■□□□□ 0.06
BDNFP23560 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC15.43■□□□□ 0.06
BDNFP23560 AC078875.1-201ENST00000431907 724 ntBASIC15.43■□□□□ 0.06
BDNFP23560 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC15.43■□□□□ 0.06
BDNFP23560 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC15.43■□□□□ 0.06
BDNFP23560 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC15.43■□□□□ 0.06
BDNFP23560 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 RAN-210ENST00000541630 1475 ntTSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.43■□□□□ 0.06
BDNFP23560 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.43■□□□□ 0.06
BDNFP23560 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.43■□□□□ 0.06
BDNFP23560 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 AC106881.1-201ENST00000605849 3329 ntBASIC15.43■□□□□ 0.06
BDNFP23560 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.43■□□□□ 0.06
BDNFP23560 MYADML-201ENST00000474610 2147 ntBASIC15.43■□□□□ 0.06
BDNFP23560 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.43■□□□□ 0.06
BDNFP23560 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 AC099063.4-201ENST00000641099 1602 ntBASIC15.43■□□□□ 0.06
BDNFP23560 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
BDNFP23560 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
BDNFP23560 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
BDNFP23560 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
BDNFP23560 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 AC008132.1-202ENST00000342005 1389 ntBASIC15.42■□□□□ 0.06
BDNFP23560 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC15.42■□□□□ 0.06
BDNFP23560 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.42■□□□□ 0.06
BDNFP23560 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
BDNFP23560 CMC1-204ENST00000423894 549 ntTSL 2 BASIC15.42■□□□□ 0.06
BDNFP23560 Z97180.1-201ENST00000445173 988 ntBASIC15.42■□□□□ 0.06
BDNFP23560 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC15.42■□□□□ 0.06
BDNFP23560 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC15.42■□□□□ 0.06
BDNFP23560 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
BDNFP23560 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.42■□□□□ 0.06
BDNFP23560 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
BDNFP23560 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 AP001505.2-201ENST00000616815 443 ntBASIC15.42■□□□□ 0.06
BDNFP23560 AC092299.1-201ENST00000632679 757 ntBASIC15.42■□□□□ 0.06
BDNFP23560 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.42■□□□□ 0.06
BDNFP23560 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.42■□□□□ 0.06
BDNFP23560 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
BDNFP23560 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
BDNFP23560 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
BDNFP23560 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.41■□□□□ 0.06
BDNFP23560 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.41■□□□□ 0.06
BDNFP23560 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
BDNFP23560 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms