Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC12.5□□□□□ -0.41
USF1P22415 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC12.5□□□□□ -0.41
USF1P22415 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC12.5□□□□□ -0.41
USF1P22415 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC12.5□□□□□ -0.41
USF1P22415 MIR4683-201ENST00000579659 81 ntBASIC12.5□□□□□ -0.41
USF1P22415 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC12.5□□□□□ -0.41
USF1P22415 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC12.5□□□□□ -0.41
USF1P22415 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC12.5□□□□□ -0.41
USF1P22415 AC002472.3-201ENST00000640124 621 ntBASIC12.5□□□□□ -0.41
USF1P22415 AL805961.1-203ENST00000641078 1258 ntBASIC12.5□□□□□ -0.41
USF1P22415 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC12.5□□□□□ -0.41
USF1P22415 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC12.5□□□□□ -0.41
USF1P22415 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC12.5□□□□□ -0.41
USF1P22415 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC12.5□□□□□ -0.41
USF1P22415 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
USF1P22415 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
USF1P22415 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 AC004899.1-201ENST00000424687 1714 ntBASIC12.49□□□□□ -0.41
USF1P22415 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
USF1P22415 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC12.49□□□□□ -0.41
USF1P22415 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
USF1P22415 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 PTPA-217ENST00000434095 870 ntTSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 FAM58BP-201ENST00000439056 645 ntBASIC12.49□□□□□ -0.41
USF1P22415 TMEM198B-204ENST00000484016 896 ntBASIC12.49□□□□□ -0.41
USF1P22415 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC12.49□□□□□ -0.41
USF1P22415 AC024681.1-201ENST00000521917 487 ntBASIC12.49□□□□□ -0.41
USF1P22415 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC12.49□□□□□ -0.41
USF1P22415 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 FGFR3P5-201ENST00000564496 886 ntBASIC12.49□□□□□ -0.41
USF1P22415 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 AC139749.1-202ENST00000617529 3139 ntBASIC12.49□□□□□ -0.41
USF1P22415 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC12.49□□□□□ -0.41
USF1P22415 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
USF1P22415 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
USF1P22415 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC12.49□□□□□ -0.41
USF1P22415 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.49□□□□□ -0.41
USF1P22415 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 AL359258.3-201ENST00000622910 2331 ntBASIC12.49□□□□□ -0.41
USF1P22415 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 AC013726.1-201ENST00000563747 2285 ntBASIC12.49□□□□□ -0.41
USF1P22415 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
USF1P22415 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC12.49□□□□□ -0.41
USF1P22415 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms