Protein–RNA interactions for Protein: P06753

TPM3, Tropomyosin alpha-3 chain, humanhuman

Predictions only

Length 285 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3P06753 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC16.53■□□□□ 0.24
TPM3P06753 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC16.53■□□□□ 0.24
TPM3P06753 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC16.53■□□□□ 0.24
TPM3P06753 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
TPM3P06753 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC16.52■□□□□ 0.24
TPM3P06753 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
TPM3P06753 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.52■□□□□ 0.24
TPM3P06753 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
TPM3P06753 AC019294.4-201ENST00000561777 2905 ntBASIC16.52■□□□□ 0.24
TPM3P06753 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
TPM3P06753 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
TPM3P06753 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC16.52■□□□□ 0.24
TPM3P06753 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
TPM3P06753 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
TPM3P06753 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
TPM3P06753 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.52■□□□□ 0.24
TPM3P06753 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.52■□□□□ 0.24
TPM3P06753 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.52■□□□□ 0.24
TPM3P06753 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.52■□□□□ 0.24
TPM3P06753 AL138828.2-201ENST00000615812 383 ntBASIC16.52■□□□□ 0.24
TPM3P06753 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC16.52■□□□□ 0.24
TPM3P06753 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM3P06753 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
TPM3P06753 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC16.52■□□□□ 0.23
TPM3P06753 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.23
TPM3P06753 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
TPM3P06753 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
TPM3P06753 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TPM3P06753 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
TPM3P06753 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
TPM3P06753 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
TPM3P06753 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TPM3P06753 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
TPM3P06753 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
TPM3P06753 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
TPM3P06753 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TPM3P06753 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TPM3P06753 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TPM3P06753 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TPM3P06753 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC16.51■□□□□ 0.23
TPM3P06753 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
TPM3P06753 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.51■□□□□ 0.23
TPM3P06753 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC16.51■□□□□ 0.23
TPM3P06753 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.51■□□□□ 0.23
TPM3P06753 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.51■□□□□ 0.23
TPM3P06753 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TPM3P06753 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.51■□□□□ 0.23
TPM3P06753 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.51■□□□□ 0.23
TPM3P06753 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
TPM3P06753 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.51■□□□□ 0.23
TPM3P06753 C2-206ENST00000442278 2434 ntTSL 2 BASIC16.51■□□□□ 0.23
TPM3P06753 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 AMT-221ENST00000538581 2038 ntTSL 2 BASIC16.51■□□□□ 0.23
TPM3P06753 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC16.51■□□□□ 0.23
TPM3P06753 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TPM3P06753 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
TPM3P06753 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.51■□□□□ 0.23
TPM3P06753 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TPM3P06753 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TPM3P06753 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC16.5■□□□□ 0.23
TPM3P06753 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TPM3P06753 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC16.5■□□□□ 0.23
TPM3P06753 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms